| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,441 | A→C | 6.3% | intergenic (+480/+134) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,441 | 0 | A | C | 6.3% | 1430.5 / 7.2 | 561 | intergenic (+480/+134) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base A (300/182); new base C (36/8); total (364/197) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.73e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 568 total aligned reads displayed.
TTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGT > CP009273/3263374‑3263507 | ttctttTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGa < 1:21419554/68‑1 (MQ=35) tttGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCg > 1:35702245/1‑68 (MQ=35) tttGGGTATAGTGTCGTGGACAGTCATTAATCTTTCAGCCCCTACAAAAACAAAAACCCGCCGCAGcc > 1:22123299/1‑67 (MQ=11) gctatacccaaaagaaagcggcttatcggtcagtttcacctggtttacgtAAAAACCCGCCGAAGCgg < 1:37139695‑M1/18‑1 (MQ=255) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCggg < 1:23242665/68‑1 (MQ=35) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCggg < 1:19177615/68‑1 (MQ=35) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCggg < 1:33716662/68‑1 (MQ=35) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCggg < 1:16659939/68‑1 (MQ=35) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCggg < 1:16191509/68‑1 (MQ=35) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:35040421/68‑1 (MQ=35) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:33109752/68‑1 (MQ=35) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:11084670/68‑1 (MQ=35) ggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAATCGGGtt > 1:6808689/1‑68 (MQ=25) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGCAGCGGGttt > 1:14878677/1‑68 (MQ=25) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCgggat < 1:26120675/67‑3 (MQ=25) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtt < 1:829736/67‑1 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtt < 1:14657520/67‑1 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtt < 1:4111340/67‑1 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtt < 1:12028823/67‑1 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtt < 1:17611111/67‑1 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGgtt > 1:34431595/1‑68 (MQ=25) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGAAGCGGGgtt > 1:38547501/1‑68 (MQ=255) gTATAGTGTCGTGGACAGTCATTCATCTTTCAGCCCCTACAAAAGCAAAAACCCGCCGAAGCCGGgtt > 1:1521472/1‑68 (MQ=11) gTATAGTGTCGTGGACAGTAAAACATCTTTCAGCCCCTCCAAAAGCAAAAACCCCCCGAAGCGGGgtt > 1:21302799/1‑68 (MQ=11) acccaaaagaaagcggcttatcggtcagtttaacctggttttcgtTAAAACCCGCCGGAGCGGGgttt < 1:12931846‑M1/23‑1 (MQ=255) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt > 1:20950565/1‑68 (MQ=35) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGgtttt > 1:21769993/1‑68 (MQ=25) taGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTa < 1:23441660/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:17266336/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:25716630/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:20126948/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:35481784/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:1556461/68‑1 (MQ=35) gtgtCGTGGACAGTCATTCATCTTTGTGCCCCAACAAAAGCAAAAACCCCCCGCAGCGGGTTTTTACg > 1:22988510/1‑68 (MQ=11) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:39501282/1‑68 (MQ=33) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:27025845/1‑68 (MQ=33) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTACAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:37521692/1‑68 (MQ=18) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:13394738/1‑68 (MQ=18) tGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGCAGCGCGTTTTTACGTAAAc > 1:944777/1‑67 (MQ=255) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGCAGCCGGTTTTTACGTAAACCa > 1:26458395/1‑68 (MQ=255) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa > 1:24874769/1‑68 (MQ=35) ggACAGTCATTCATCTTTCTGCCCCTACAAAAGCAAAAACCCGCCGAAGCGGCTTTTTACGTAAACCa > 1:11290869/1‑68 (MQ=11) ggACAGTCATTCATCTTTCTCCCCCTACAAAAGCAAAAACCCGCCGAAGCGGCTTTTTACGTAAACCa > 1:38152468/1‑68 (MQ=11) ggACAGTCATTCATCTATCTGCCCCTACAAAAGCAAAAACCCGCCGAATCGGGTTTTTACGTAAACCa > 1:4722634/1‑68 (MQ=11) aCAGTCATTCATGTTTCTGCCCATCCAAAAGCAAAAACCCGCCCAAGCGGGTTTTTACGTAAACCAgg > 1:7276145/1‑68 (MQ=11) aCAGTCATTCATCTTTCTGCGCCTCCAAAAGCAAAAACCCGCCGAAGCCCCTTTTTACGTAAACCAgg > 1:5322421/1‑68 (MQ=11) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAACCCAgc > 1:12421458/1‑67 (MQ=16) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:36410989/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:6722292/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:2551074/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:13693477/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:31092943/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa < 1:15802044/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa > 1:30671885/1‑67 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa < 1:431905/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGt < 1:37018617/64‑1 (MQ=25) attcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa > 1:32343835/1‑66 (MQ=35) catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa < 1:11914054/68‑1 (MQ=35) catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa < 1:5994742/68‑1 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:14116595/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:33540028/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:34789387/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:39172167/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:18185539/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACAAGGTGAAACAGa > 1:37851392/1‑67 (MQ=255) tatttCTGCCCCTCCAAAATCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc < 1:18851814/66‑1 (MQ=255) cTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCg > 1:17086636/1‑68 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:2236826/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:10019949/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:30426899/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:29108414/1‑67 (MQ=35) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCg > 1:30030339/1‑68 (MQ=35) cAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttc < 1:18564516/68‑1 (MQ=40) aaaaTCATAAACCCGCCTGATCGGTTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGctttct < 1:28471424/68‑1 (MQ=14) aaaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttct < 1:24578302/68‑1 (MQ=255) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCtttt > 1:27787326/1‑68 (MQ=40) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg > 1:17756316/1‑68 (MQ=39) ctcAAACCCGCCGTAACGGTTTTTTACGTACACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg > 1:23878050‑M1/4‑68 (MQ=255) catAAACCCGCCGTATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTgg > 1:10706082‑M1/4‑68 (MQ=255) catAAACCCGCCGTAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTgg > 1:9105207‑M1/4‑68 (MQ=255) cacAAACCCGCCGAAACGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTgg > 1:32014012‑M1/4‑68 (MQ=255) AAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTggg > 1:20630587‑M1/1‑68 (MQ=255) AAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTggg > 1:36713299‑M1/1‑68 (MQ=255) AAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg > 1:38972654‑M1/1‑67 (MQ=255) tAAACCCGCCTAATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:28084429‑M1/2‑68 (MQ=255) tAAACCCGCCGTATCGGGTTTTTACGTAAACCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:31469666‑M1/2‑68 (MQ=255) tAAACCCGCCGTATCGGGTTATTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:1700280‑M1/2‑68 (MQ=255) AAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:30182264‑M1/1‑68 (MQ=255) AAAACCCGCCGAACCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:10423937‑M1/1‑68 (MQ=255) AACCCGCCGGATCGGGTTATTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt > 1:27455272‑M1/1‑66 (MQ=255) CCCGCCGCACCGGTTTTTTACGTAAAGCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAg > 1:29550620‑M1/1‑68 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGGTTTCTTTTGGGtata < 1:19511365‑M1/67‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata < 1:5126900‑M1/67‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata < 1:16336206‑M1/67‑1 (MQ=255) gccgCAGCGGGTTTTTACGTACATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:28862678/68‑1 (MQ=11) GCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGt > 1:35969315‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGt > 1:19779167‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGt > 1:8698115‑M1/1‑68 (MQ=255) GCCGAACCGGTTTTTTACGTATACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGTGTATAGCGt > 1:32739124‑M1/1‑68 (MQ=255) gAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgtcgt < 1:1022897/68‑1 (MQ=40) | TTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGT > CP009273/3263374‑3263507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |