| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,560 | G→T | 7.3% | intergenic (+599/+15) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,560 | 0 | G | T | 7.3% | 1837.5 / 22.6 | 638 | intergenic (+599/+15) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base G (362/214); new base T (43/14); total (410/228) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.13e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 643 total aligned reads displayed.
TGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCAT > CP009273/3263493‑3263622 | gggTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:36474589/68‑1 (MQ=35) gggTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:5679329/68‑1 (MQ=35) gggCATAGCCTCGGGGACCGTCATTCATCATTCTGCCCCTCCAACCGCAAAAACCCGCCGACGCGGGt < 1:21951297/68‑1 (MQ=11) gTATAGCGTCGTGGCCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:3353008/1‑68 (MQ=25) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:19095517/1‑68 (MQ=35) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:10544165/1‑68 (MQ=35) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:12023855/1‑68 (MQ=35) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:31994224/1‑68 (MQ=35) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:14570504/1‑68 (MQ=35) gTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGgtt > 1:37577594/1‑68 (MQ=25) gTATAGCGTCGTGGAAAGTCATTCATCTTTATGCCCCAACAAAAGCAAAAACCCGCCCAAGCGGGttt > 1:34016416/1‑68 (MQ=11) ataGCGTCGTGGCCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGCAGCGGGttttt > 1:7139631/1‑68 (MQ=255) ataGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt > 1:23345454/1‑68 (MQ=35) ataGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAACCAAAAACCCGCCCAAGCGGGttttt > 1:31701787/1‑68 (MQ=255) gCGTCGTGGGCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCGGAAGAGGGTTTTTACg > 1:28508780/1‑68 (MQ=11) gCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:33144589/1‑68 (MQ=33) gCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:1300817/1‑68 (MQ=33) gCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:21033125/1‑68 (MQ=33) gCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:3703914/1‑68 (MQ=33) gCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:20244916/1‑68 (MQ=33) gCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:38529003/1‑68 (MQ=33) gCGTCGTGGACAGTCATTAATCTTTATGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:5795510/1‑68 (MQ=255) cgtcgtGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAAGt > 1:35432683/1‑68 (MQ=14) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCa > 1:23989825/1‑68 (MQ=35) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCa > 1:28162119/1‑68 (MQ=35) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCa > 1:11598631/1‑68 (MQ=25) taCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:28854501/67‑1 (MQ=25) tcAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:34877510/2‑68 (MQ=25) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg > 1:26177836/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:6324220/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:32333693/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAg < 1:18893799/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACACGCCGAAGCGGCTTTTTAAGTAAATCAgg > 1:7408243/1‑68 (MQ=11) aCAGTCATTCATCTTTCTGCCCCTACAAAAGAAAAAACCCGCCGCAGCGGCTTTTTACGTAAATCAgg > 1:14282753/1‑68 (MQ=11) aCAGTCATTCATCTTTCTGACCCTCCAAAAGAAAAAACCCGCCGACGCGGGGTTTTACGTAAATGAgg > 1:36338494/1‑68 (MQ=11) aGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTg > 1:39198023/1‑68 (MQ=35) gTCATTCATCTTTCTGCCACTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa < 1:30019137/68‑1 (MQ=25) tcattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGt < 1:1435154/65‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAgg < 1:12468306/63‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGt < 1:21228000/64‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa < 1:11265840/67‑1 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:14911021/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:8828977/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:8321446/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:16291552/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:10023263/1‑67 (MQ=255) atttATGCCACTCCAAAAGCAAAAACCCGCCGAATCGGGTTTTTACGTAAATCAGGTGAAACTGACCg < 1:12651151/67‑1 (MQ=11) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGa > 1:13212636/1‑68 (MQ=35) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGa > 1:26377206/1‑68 (MQ=35) ggcccTCAAAAATCATAAACCCGCCGAAGCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGc < 1:9104412/66‑1 (MQ=11) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:20722209/1‑67 (MQ=35) acctgatttacgtAAAAACCCGCCGAAGCGGGTTTTTAAGTAAATCAGGTGAAACTGACCGATAAGcc < 1:3883748‑M1/55‑1 (MQ=255) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg > 1:8550439/1‑68 (MQ=35) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg > 1:22136782/1‑68 (MQ=35) ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg > 1:39514143/1‑68 (MQ=14) ccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg > 1:34488399/1‑68 (MQ=37) ccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg < 1:15458241/68‑1 (MQ=37) tCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt < 1:22830958/68‑1 (MQ=40) tCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt < 1:4454875/68‑1 (MQ=40) aatcAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:38010059/65‑1 (MQ=255) aaGCACAAACCCGCCGCACCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGt < 1:19414291/68‑1 (MQ=17) aaGCAAAAACGCGCCGATGCGGGTTTTTTGGTAAAACCGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:34339304/68‑1 (MQ=14) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:15839528/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:5292648/68‑1 (MQ=255) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGCCCGATAAGCCGGGTTCTGTCg > 1:17536142/1‑68 (MQ=255) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 1:32677783/1‑68 (MQ=255) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 1:25215452/1‑68 (MQ=255) cacAAACCCGCCGTACCGGTTTTTTACGTACATCAGGTCAAACTGACCGATAAGCCGGGTTCTGTCGt > 1:16971013‑M1/4‑68 (MQ=255) tcAAACCCGCCGTAGCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 1:21520292‑M1/3‑66 (MQ=255) AAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 1:10246288‑M1/1‑66 (MQ=255) AAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTgg > 1:3522343‑M1/1‑68 (MQ=255) ACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa < 1:13636756‑M1/68‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg < 1:24696927‑M1/68‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg < 1:17759549‑M1/68‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg < 1:14032393‑M1/68‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg < 1:12783143‑M1/68‑1 (MQ=255) ccggcgCAGCGGTTTTTTACGTACATCAGGTCAAACTGACCGATAAGCGGGGTTCTGTCGTGGACAGt < 1:27558144/68‑1 (MQ=18) ccgccgAAGCGTGTTTTTACGTAAATCCGGGTTAACTGACCGATAATCCGTGTTGTGTCGTGGACAGt < 1:17207608/68‑1 (MQ=18) CCGCCGTACCGGGTTATTACGTACATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:24177905‑M1/1‑68 (MQ=255) CCGCCGCAGCGGTTTATTACTTAAATAAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:27875454‑M1/1‑68 (MQ=255) CCGCCGCACCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:30826094‑M1/1‑68 (MQ=255) CCGCCGAATCGGTTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:19906345‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:6694839‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:31068270‑M1/1‑68 (MQ=255) CCGCCGAACCGGTTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:9478641‑M1/1‑68 (MQ=255) cgccgACGCGTGTTTTTACGTAAATAACGTGAAACTGACCTATAATCCGGTTTCTGTCGTGGACAGtc < 1:29138954/68‑1 (MQ=18) CGCCGTACCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:4779484‑M1/1‑68 (MQ=255) CGCCGCATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:29710491‑M1/1‑68 (MQ=255) CGCCGCATCGGGTTATTACGTACATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:1831526‑M1/1‑68 (MQ=255) CGCCGAATCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:4938343‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCCGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:31259210‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCTATAAGCCGTGTTCTGTCGTGGACAGTc > 1:9825710‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:36157868‑M1/1‑68 (MQ=255) CGCCGAACCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:6092910‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCa > 1:1083640‑M1/1‑68 (MQ=255) aGCGGGTTTTTTCGTAAATCAGGTGAAACTGACAGATAAGCCGGGTTCTGTCGTGGACAGtcattca < 1:37397394/67‑1 (MQ=255) aGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:26958439/68‑1 (MQ=255) aGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:18646639/68‑1 (MQ=255) aGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:2556398/68‑1 (MQ=255) aGCGGGTTTTTACGTAAATCAGGAGAAACTGACCGATAAGCCGGCTTCTGTCGTGGACAGtcattcat < 1:7732589/68‑1 (MQ=25) | TGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCAT > CP009273/3263493‑3263622 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |