| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,579 | G→T | 13.3% | noncoding (373/377 nt) | rnpB ← | RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,579 | 0 | G | T | 13.3% | 1418.1 / 41.1 | 522 | noncoding (373/377 nt) | rnpB | RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base G (246/186); new base T (42/35); total (297/225) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 537 total aligned reads displayed.
AGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGG > CP009273/3263512‑3263645 | aGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTg > 1:39198023/1‑68 (MQ=35) gTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa > 1:12653484/1‑68 (MQ=35) tcattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa > 1:17609256/1‑68 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa < 1:25470524/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa > 1:13157449/1‑67 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa < 1:37469/67‑1 (MQ=35) tcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTg > 1:27170940/1‑68 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:14719120/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:28642470/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:35335929/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:32226836/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:14154701/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:37285653/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:13078631/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:10023263/1‑67 (MQ=255) agtttcacctgatttacgtAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGCCCGa < 1:36915859‑M1/49‑1 (MQ=255) ttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGAt > 1:20445574/1‑68 (MQ=35) cTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATaa < 1:8529207/68‑1 (MQ=35) tGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg < 1:7781314/68‑1 (MQ=35) tGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg < 1:32600743/68‑1 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:33597006/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:23373161/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:19402363/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGc < 1:24303956/68‑1 (MQ=35) acctgatttacgtAAAAACCCGCCGAAGCGGGTTTTTAAGTAAATCAGGTGAAACTGACCGATAAGcc < 1:3883748‑M1/55‑1 (MQ=255) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg > 1:22820066/1‑68 (MQ=35) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg > 1:36420678/1‑68 (MQ=35) ctgatttacgtAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg < 1:7193033‑M1/57‑1 (MQ=255) ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg > 1:39514143/1‑68 (MQ=14) ccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg > 1:34488399/1‑68 (MQ=37) acTCAAAAATCAGAAACCCGCCGCATCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCgg < 1:6020295/67‑1 (MQ=11) tCCACAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt < 1:118695/68‑1 (MQ=255) tCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt < 1:2195377/68‑1 (MQ=40) aaaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCt < 1:17223423/68‑1 (MQ=255) aatcAAAAACCCGCCGCATCGGGTTTTTACGTACATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:4935294/65‑1 (MQ=17) aatcAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:38010059/65‑1 (MQ=255) aaGCACAAACCCGCCGCAGCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:16491747/68‑1 (MQ=17) aaGCACAAACCCGCCGAACCGGGTTATTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:30415006/68‑1 (MQ=17) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGACACTGACCGATAAGCCGGGt > 1:24146014/1‑63 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:19654655/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:8675779/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:13898265/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:6416266/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:28086332/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:6224872/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:17968904/68‑1 (MQ=255) agtAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGGGTTCTgtg < 1:4695635‑M1/65‑2 (MQ=255) gCAAAAACCCGCCTAAGCGGCTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 1:34183911/1‑68 (MQ=255) tcAAACCCGCCGTAGCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 1:21520292‑M1/3‑66 (MQ=255) atAAACCCGCCGAACCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGt > 1:15289262‑M1/3‑67 (MQ=255) AAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 1:10246288‑M1/1‑66 (MQ=255) AAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGt > 1:31402435‑M1/1‑67 (MQ=255) ACCCGCCGCACCGGGTTATTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa > 1:6953023‑M1/1‑68 (MQ=255) ACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa < 1:31087237‑M1/68‑1 (MQ=255) ACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa < 1:13636756‑M1/68‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg < 1:21116185‑M1/68‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg < 1:24696927‑M1/68‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg < 1:26455786‑M1/68‑1 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTAGTGGACAg < 1:12530239‑M1/68‑1 (MQ=255) ccggcgCAGCGGTTTTTTACGTACATCAGGTCAAACTGACCGATAAGCGGGGTTCTGTCGTGGACAGt < 1:27558144/68‑1 (MQ=18) aCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:31946268‑M1/2‑68 (MQ=255) CCGCCGTATCGGTTTTTTACGTACATCAGGTTAATCTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:18995683‑M1/1‑68 (MQ=255) CCGCCGTATCGGGTTTTTACGTACATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:12792862‑M1/1‑68 (MQ=255) CCGCCGCATCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:5123999‑M1/1‑68 (MQ=255) CCGCCGCATCGGGTTTTTACGTAAATCAGGTCAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:29872596‑M1/1‑68 (MQ=255) CCGCCGCAGCGGTTTATTACTTAAATAAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:27875454‑M1/1‑68 (MQ=255) CCGCCGCACCGGTTTTTTACGTACATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:5425125‑M1/1‑68 (MQ=255) CCGCCGCACCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:29426880‑M1/1‑68 (MQ=255) CCGCCGAAGCGTGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:18377502‑M1/1‑68 (MQ=255) CCGCCGAAGCGGTTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:9803207‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:11391799‑M1/1‑68 (MQ=255) CGCCGAAGCGGTTTATTACGTACATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:30876829‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:883429‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:7567440‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:25016062‑M1/1‑68 (MQ=255) GCCGCAGCGGTTTATTACGTACATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCa > 1:9175249‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCa > 1:16221888‑M1/1‑68 (MQ=255) accgggtttttACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:19171496‑M2/57‑1 (MQ=255) aGCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:18823904/68‑1 (MQ=255) aGCGGTTTATTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattca < 1:8184408/67‑1 (MQ=255) aGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:10622455/68‑1 (MQ=255) aGCGGGTTTTTACGTAAATCAGGTGAAACAGACTGATAAGCCGGCTTCTGTCGTGGACAGtcattca < 1:28993853/67‑1 (MQ=25) tttttACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAgg < 1:3499530‑M2/62‑1 (MQ=255) ttattACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAgg < 1:35934864‑M2/62‑1 (MQ=255) tACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGc > 1:20094897‑M2/2‑68 (MQ=255) acctAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCa > 1:5735892/4‑68 (MQ=255) aCGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCa < 1:4084568/68‑1 (MQ=255) aCGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCa < 1:15522711/68‑1 (MQ=255) gTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAAt < 1:25762457/68‑1 (MQ=255) aaaTCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATc < 1:11083968/67‑1 (MQ=255) tCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc > 1:34352868/1‑68 (MQ=255) ccggTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCa < 1:23972197/66‑1 (MQ=255) acggTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCa < 1:14530093/66‑1 (MQ=255) tGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTg > 1:26896331/1‑67 (MQ=255) tGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTg > 1:38575327/1‑67 (MQ=255) tGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTg > 1:9381075/1‑67 (MQ=255) tGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTg > 1:32975674/1‑67 (MQ=255) gAATCTGACCTATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTgg < 1:17017710/67‑1 (MQ=255) gAACCTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTgg < 1:22317207/67‑1 (MQ=255) gAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTgg < 1:22595002/67‑1 (MQ=255) | AGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGG > CP009273/3263512‑3263645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |