New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2333864	NA (NA)	4 (0.010) +TTATCCGG	3/96	NT	NA	noncoding (73/82 nt)	REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	CP009273	4307765 =	NA (NA)					noncoding (32/83 nt)	REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences

CTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2333815‑2333864 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTACGGGGAGC  >  CP009273/4307765‑4307776                                                   ||||||||             CTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCCTACGGGGA    <  1:17913668/68‑1 CTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCCTACGGGGA    <  1:17955640/68‑1  TTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCAGCCGGCCTACGGGGAG   <  1:26040922/68‑1   TATCAGGCCTACAAATGCTCCCCGTCGGCCGGATAAGGCGTTTACGCCGCATCCGGCCTACGGGGAGC  <  1:30312332/68‑1                                                   ||||||||             CTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2333815‑2333864 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTACGGGGAGC  >  CP009273/4307765‑4307776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.