New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3323803 =	NA (NA)	4 (0.010) +G	3/110	NT	NA	intergenic (+48/+138)	dacB/obgE	D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair
	?	CP009273	= 3734462	NA (NA)					intergenic (+144/+7)	avtA/ysaA	valine‑pyruvate aminotransferase 1/putative hydrogenase, 4Fe‑4S ferredoxin‑type component

CGTTTACGCCGCATCCGGCATAAACAAAGCGCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3323837‑3323803 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAAC  <  CP009273/3734462‑3734404                                    |                                                            CGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGGTTGTCAACGGCGGGACAGTGggg                             >  1:21399233/1‑65             ATCTGGCATAAACAAAGCGCACTGTTCCGGCGGTTCTGAACGGCGGGACAGTGCGCTTTGTTTATTCC                 >  1:23731900/1‑68                        ACAAAGCGCACTGTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGT      >  1:29056008/1‑68                             GCGCACTGTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAAC  >  1:22391552/1‑67                                    |                                                            CGTTTACGCCGCATCCGGCATAAACAAAGCGCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3323837‑3323803 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAAAC  <  CP009273/3734462‑3734404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.