| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4328027 = | 238 (0.570) | 15 (0.040) | 7/96 | NT | 6.1% | intergenic (‑281/+44) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase |
| ? | CP009273 | 4328055 = | 261 (0.730) | intergenic (‑309/+16) | adiY/adiA | adi system transcriptional activator/arginine decarboxylase | |||||
Only 100 of 369 total aligned reads displayed.
TATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTG > CP009273/4327960‑4328094 | ggactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag < 1:28818912‑M1/1‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:10472467/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:7729135/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:28628459/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:5427261/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:4630125/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:16065540/68‑1 (MQ=255) tGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcggc < 1:15516802/68‑1 (MQ=255) gactgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaag > 1:1214541‑M1/66‑66 (MQ=255) actgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGc > 1:3338824‑M1/65‑67 (MQ=255) ctgaaattattgacggtatttaccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGCGt < 1:25512403‑M1/5‑1 (MQ=255) aCATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGt > 1:19401142/1‑68 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:33031858/1‑68 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:25799278/1‑68 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:18222883/1‑68 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:14787030/1‑68 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:22179728/1‑68 (MQ=255) aTTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa > 1:1444623/1‑68 (MQ=255) tttttGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt < 1:32195030/68‑1 (MQ=255) tttttGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt < 1:31201273/68‑1 (MQ=255) tttttGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt < 1:20656601/68‑1 (MQ=255) tgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa < 1:10943317/68‑1 (MQ=255) tgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa > 1:20446027/1‑68 (MQ=255) tgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa > 1:30909308/1‑68 (MQ=255) tgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa > 1:9007940/1‑68 (MQ=255) tgtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa < 1:6360524/68‑1 (MQ=255) tgtatgCAGCAATTTTTATGAAAACGTTGCCATAATCAAAACGCCTAAGGCCAGGCGGCGTATTGTTa > 1:17042974/1‑68 (MQ=255) gtttgCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTAt > 1:31580257/1‑68 (MQ=255) gcagcaATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTaa < 1:12833804/68‑1 (MQ=255) aaTTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACa < 1:3893343/66‑1 (MQ=255) aaTTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAAt < 1:15935275/68‑1 (MQ=255) ttATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACg > 1:31888233/1‑67 (MQ=255) ccacgttatgtgcgtgaaagcgtaaccactattccgctgaaGGCGTATTGTTTTTTAAACAATTACg < 1:10028070‑M1/26‑1 (MQ=255) tatgtgcgtgaaagcgtaaccactattccgctggaGGCGGAATGTTATTTTAACAATTACGccttga < 1:21220570‑M1/32‑3 (MQ=255) aaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGc < 1:29322788/68‑1 (MQ=255) aaCGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGc < 1:33707039/68‑1 (MQ=255) gTTGCCATACTGAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGa < 1:978613/68‑1 (MQ=255) gTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGa < 1:19306627/68‑1 (MQ=255) gTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGa < 1:15220426/68‑1 (MQ=255) gTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGa < 1:34668811/68‑1 (MQ=255) gTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGa < 1:24665346/68‑1 (MQ=255) gCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATa < 1:26216368/68‑1 (MQ=255) gCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATa > 1:22741281/1‑68 (MQ=255) ccATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAg > 1:25332833/1‑68 (MQ=255) cATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGt > 1:1996909/1‑68 (MQ=255) aTACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTg < 1:32876412/68‑1 (MQ=255) tACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTgg < 1:10112005/68‑1 (MQ=255) aCTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGt > 1:1116374/1‑68 (MQ=255) aCTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGt > 1:5087126/1‑68 (MQ=255) aCTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGt > 1:13847568/1‑68 (MQ=255) tCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGtt > 1:23297567/1‑67 (MQ=255) tCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGtt > 1:8669058/1‑67 (MQ=255) tCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGtt > 1:34249041/1‑67 (MQ=255) tCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGtt > 1:16159131/1‑67 (MQ=255) tCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGtt > 1:27204971/1‑67 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTAc > 1:5773305/1‑66 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTAc > 1:28380452/1‑66 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTAc > 1:16905919/1‑66 (MQ=255) aaaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTAc > 1:30637335/1‑66 (MQ=255) aaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCt < 1:13163953/68‑1 (MQ=255) aaGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCt > 1:9302142/1‑68 (MQ=255) aGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:3968148/1‑68 (MQ=255) aGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:18702383/1‑68 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:19566459/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:15607898/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:524326/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:15453508/1‑67 (MQ=255) ggCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCtt > 1:14962012/1‑67 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCNGAATAGTGGTTACGCttt < 1:482600/66‑1 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCttt < 1:29799413/66‑1 (MQ=255) ccTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCttt < 1:6010867/66‑1 (MQ=255) cTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCa < 1:9653918/67‑1 (MQ=255) tAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACg < 1:30472002/68‑1 (MQ=255) tAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACg < 1:14082755/68‑1 (MQ=255) aaGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGc < 1:2255036/68‑1 (MQ=255) tccgctgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGc < 1:23707706‑M1/58‑1 (MQ=255) cggCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:28055914/67‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:7578282/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:15141442/68‑1 (MQ=255) aGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGca < 1:26683264/68‑1 (MQ=255) ggCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac > 1:6699381/1‑68 (MQ=255) ggCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac > 1:27548551/1‑68 (MQ=255) ggCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac > 1:17754090/1‑68 (MQ=255) gcccAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcac > 1:3569240/3‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:1887406/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:2387929/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:33907433/1‑68 (MQ=255) gCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:33162005/1‑68 (MQ=255) gCCACGCGGCGTAATGTTATTGAATCAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGcaca > 1:24939900/1‑68 (MQ=255) gctgaaGGCGTAATGTTTTTTAAACAATTACGCGTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt < 1:29625157‑M1/62‑1 (MQ=255) gctgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt < 1:20281344‑M1/62‑1 (MQ=255) gctgaaGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACAt < 1:22244096‑M1/62‑1 (MQ=255) cAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATa < 1:2099326/68‑1 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:11720552/1‑68 (MQ=255) gcggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACg > 1:18008377/1‑68 (MQ=255) cggcgTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGc > 1:16708897/1‑51 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:12484509‑M1/1‑67 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:677714‑M1/1‑67 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGt > 1:7138206‑M1/1‑67 (MQ=255) GGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTg < 1:13576748‑M1/68‑1 (MQ=255) | TATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCACGCACATAACGTG > CP009273/4327960‑4328094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |