| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 173463 | NA (NA) | 6 (0.020) | 4/88 | NT | NA | noncoding (8/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 173466 | NA (NA) | noncoding (11/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 498 total aligned reads displayed.
GAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGA > CP009273/173396‑173530 | aCGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATaa < 1:11863041/67‑1 (MQ=255) cgcgAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATaa > 1:30658952/1‑66 (MQ=255) gAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtat > 1:7917182‑M2/1‑65 (MQ=255) aGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccgg > 1:4590553‑M2/1‑61 (MQ=255) aCCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggca > 1:2468200‑M2/1‑58 (MQ=255) aCCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggca > 1:11435239‑M2/1‑58 (MQ=255) aCCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggc > 1:24547962‑M2/1‑58 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTCGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca > 1:26854702‑M2/1‑57 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca > 1:24208305‑M2/1‑57 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca < 1:21036329‑M2/68‑12 (MQ=255) cTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcacat > 1:30879513‑M2/1‑56 (MQ=255) tgcggttgcggtTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtc < 1:14674536/68‑1 (MQ=255) tgcggttgcggtTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtc < 1:855366/68‑1 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:29313939/68‑1 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:31754397/68‑1 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:31980208/68‑1 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:33074756/68‑1 (MQ=255) tgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTtctct < 1:26089796/68‑1 (MQ=255) tgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTtctct < 1:5539668/68‑1 (MQ=255) ttcttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCa > 1:25260600/1‑68 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:21760620/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:15892946/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:25797451/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:34050985/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:28843403/68‑1 (MQ=255) tcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg > 1:742575/1‑67 (MQ=255) tcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGc < 1:16175670/68‑1 (MQ=255) tcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGc < 1:28459444/68‑1 (MQ=255) ccTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcacatgaacaacagattagata > 1:32295376‑M2/1‑39 (MQ=255) ccTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGcc < 1:22145354/68‑1 (MQ=255) ccTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCAGCACATCTTCTCTCTTCAACGcc < 1:22670580/68‑1 (MQ=255) cTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGccc > 1:13343868/1‑68 (MQ=255) cTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGccc > 1:29104554/1‑68 (MQ=255) cTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGccc > 1:15768438/1‑68 (MQ=255) ttAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt < 1:11361445/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcacatgaacaacagattagatactaa > 1:9416305‑M2/1‑35 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTTTCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:1236154/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:8787571/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:22941467/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:24992430/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:12986039/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:21299302/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:1377850/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:17696661/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:16492010/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:14441144/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCACTCTTCAACGCCCAt > 1:19454667/1‑67 (MQ=255) tAGTATCTAATCTGCTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:23509866/68‑1 (MQ=255) aGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:14301240/1‑66 (MQ=255) aGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:9222488/1‑66 (MQ=255) gTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATtc > 1:12655528/1‑67 (MQ=255) gTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATtc > 1:4333486/1‑67 (MQ=255) aTCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGAACATCTTCTCTCTTCAACGCCCATTCTCa > 1:31548252/1‑68 (MQ=255) aTCTAATCTGTTGTTCATGTGCCGGAAAAACtatccggcacatgaacaacagattagatactaaagga > 1:10530105‑M2/1‑31 (MQ=255) aaTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:18289279/1‑68 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:28711861/1‑67 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:34604960/1‑67 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:6236156/1‑67 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:21511520/1‑68 (MQ=255) tCTGTAGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTATTCAACGCCCATTCTCATCCAgc > 1:18704531/1‑68 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACCTCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:5943717/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCGCATTCTCATCCAgc > 1:18111038/1‑67 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:19819423/1‑67 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:27725514/1‑68 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:32953082/1‑68 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaaa < 1:21391723/68‑1 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaa > 1:3565091/1‑67 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaa > 1:12000995/1‑67 (MQ=255) ttCATGTGCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaacc > 1:18497575‑M1/1‑15 (MQ=255) ttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACg > 1:26464769/1‑68 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACg < 1:28888040/67‑1 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACg < 1:15251286/67‑1 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACg > 1:11601223/1‑67 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGt < 1:20225960/68‑1 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:8304051/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:9772850/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:10743665/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:28157479/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:27147783/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCNNNNNCAGCGCAAACGTCg > 1:14860888/1‑68 (MQ=255) aTGTGCCGGATAAACCATCCGGCCCATCTTCTCTCTTATAGGCCCAGTCTCCTCCAGCGCAAACGTCg > 1:23858951/1‑68 (MQ=255) tgtgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcagg > 1:11010610‑M1/1‑11 (MQ=255) tgtgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcagg > 1:20858772‑M1/1‑11 (MQ=255) tgtgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcagg > 1:29682742‑M1/1‑11 (MQ=255) tgtgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcagg > 1:4823324‑M1/1‑11 (MQ=255) tgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtg > 1:9338110‑M1/1‑9 (MQ=255) tgCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggt > 1:3263804‑M1/1‑9 (MQ=255) tgCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTa > 1:10263932/1‑68 (MQ=255) gCCGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggt > 1:691674‑M1/1‑8 (MQ=255) gCCGGATATACTATCCGGCACATCTTCTCTCTTCAATGCCCATTCTAATCCATCTCAAACGTCGGTAg < 1:5084182/68‑1 (MQ=255) ccGGATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgct > 1:24123821‑M1/1‑7 (MQ=255) ccGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCgggt > 1:34347026/1‑64 (MQ=255) gggATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGc < 1:31305453/66‑1 (MQ=255) cGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGc < 1:3353287/67‑1 (MQ=255) cGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGc < 1:30261410/67‑1 (MQ=255) cGGACAGACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGCCGGTAGc < 1:23754564/67‑1 (MQ=255) ggATAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgcttt > 1:17425890‑M1/1‑5 (MQ=255) aTAgtttatccggcacatgaacaacagattagatactaaaggaagaaccgcaaccgcaggtgcttttc > 1:2331222‑M1/1‑3 (MQ=255) aTAgtttatccggcacatgaacaacagattagatactaaaggaa > 1:9897066‑M1/1‑3 (MQ=255) aTAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTaa > 1:13625311/1‑68 (MQ=255) | GAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGA > CP009273/173396‑173530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |