| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 248296 = | 178 (0.430) | 23 (0.060) | 8/96 | NT | 10.5% | coding (912/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | 248360 = | 240 (0.670) | coding (976/1056 nt) | dinB | DNA polymerase IV | |||||
Only 100 of 344 total aligned reads displayed.
ATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGC > CP009273/248231‑248363 | agttgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccgcc < 1:19996316‑M1/3‑1 (MQ=255)aTTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGCGCACGTCTGGCC > 1:1632888‑M1/1‑68 (MQ=255)aTTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCC > 1:33447522‑M1/1‑68 (MQ=255)aTTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCC > 1:25254067‑M1/1‑68 (MQ=255) tGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGC > 1:32715562‑M1/1‑68 (MQ=255) tGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGC > 1:16710053‑M1/1‑68 (MQ=255) tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCcgcg < 1:26674256‑M1/6‑1 (MQ=255) tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCcgcg < 1:13428399‑M1/6‑1 (MQ=255) tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCcgcg < 1:30037212‑M1/6‑1 (MQ=255) tgtctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCcgcg < 1:10614012‑M1/6‑1 (MQ=255) gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCG < 1:12072106‑M1/68‑1 (MQ=255) gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCG < 1:15310780‑M1/68‑1 (MQ=255) tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGC < 1:19847935‑M1/68‑1 (MQ=255) ctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc > 1:21001309‑M1/60‑67 (MQ=255) ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa > 1:32150890/1‑68 (MQ=255) cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGaa < 1:1850919/68‑1 (MQ=255) cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa < 1:25661560/67‑1 (MQ=255) cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa < 1:30408677/67‑1 (MQ=255) cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa < 1:25079546/67‑1 (MQ=255) cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa < 1:27365480/67‑1 (MQ=255) cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa < 1:27111515/67‑1 (MQ=255) aGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAAt > 1:12948914/1‑68 (MQ=255) aGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAAt > 1:19604902/1‑68 (MQ=255) ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa < 1:27426202/67‑1 (MQ=255) ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa < 1:12362514/67‑1 (MQ=255) ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa < 1:323760/67‑1 (MQ=255) ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa > 1:14010698/1‑67 (MQ=255) ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa < 1:11052693/67‑1 (MQ=255) ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa > 1:7957942/1‑67 (MQ=255) ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa < 1:5321393/67‑1 (MQ=255) aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa < 1:5488183/67‑1 (MQ=255) aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa < 1:26985107/67‑1 (MQ=255) aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa < 1:30713865/67‑1 (MQ=255) aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa < 1:2050689/67‑1 (MQ=255) aTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa > 1:33876768/1‑66 (MQ=255) aTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATc < 1:3805701/68‑1 (MQ=255) ttAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCt < 1:13592409/68‑1 (MQ=255) ttAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCt > 1:21087541/1‑68 (MQ=255) ttAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCt < 1:12503656/68‑1 (MQ=255) ttAAAGTGCGACTATTTTCAGCAAACCACGCTGGAGCACGTCTGGCAGCGGCTGAATAAAGCTGATca < 1:8057018/68‑2 (MQ=255) aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGTCCGCGGCTGAATAAAGCTGATCTaa < 1:23165206/68‑1 (MQ=255) aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa < 1:29392334/68‑1 (MQ=255) aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa < 1:130562/68‑1 (MQ=255) aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa < 1:4301/68‑1 (MQ=255) aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa < 1:34562187/68‑1 (MQ=255) aGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc > 1:23578183/1‑68 (MQ=255) gTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc > 1:28954400/1‑67 (MQ=255) gTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc > 1:7282659/1‑67 (MQ=255) ttttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgc < 1:33667315/68‑1 (MQ=255) gCAAACCACCCAGGAGCACGTCTGGCCGCGGCgttcagcccaggttttacgcgggggggcgattaga > 1:9783890‑M1/1‑32 (MQ=255) gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa > 1:18004596/1‑67 (MQ=255) gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa > 1:19067205/1‑67 (MQ=255) gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa > 1:7570757/1‑67 (MQ=255) aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa < 1:31402714/66‑1 (MQ=255) aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa < 1:24272540/66‑1 (MQ=255) aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa < 1:4395480/66‑1 (MQ=255) aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa < 1:466248/66‑1 (MQ=255) aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa < 1:6771905/66‑1 (MQ=255) aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa < 1:8803679/66‑1 (MQ=255) aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAcc < 1:33169789/68‑1 (MQ=255) aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAcc < 1:31095458/68‑1 (MQ=255) aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAc < 1:22136075/67‑1 (MQ=255) ccaccCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTgg > 1:25407318/1‑68 (MQ=255) ccaccCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTgg < 1:16922615/68‑1 (MQ=255) accCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGa < 1:21834332/68‑1 (MQ=255) ccAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATg > 1:6540240/1‑68 (MQ=255) ggAGCACGTCTGGCCCCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattca > 1:11434663‑M1/1‑20 (MQ=255) cacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTACTCGCCACCGCGCGTAAAACCTGGGATGAAc < 1:12754110‑M1/56‑1 (MQ=255) cacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc < 1:5118543‑M1/56‑1 (MQ=255) aGCTCGGCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc < 1:6192978/66‑1 (MQ=255) aGCACGTCTGGCCGCGGCgttcctccccggtgttacgcgcgggggcgattagatcagcgttattcag > 1:28454474‑M1/1‑18 (MQ=255) aGCACGTCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttaatcag > 1:31584157‑M1/1‑18 (MQ=255) aGCACGTCTGGCCGCGGCggtcatcccagggtttacgcgcggtggcgattagatcagcgttattcag > 1:17504278‑M1/1‑18 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:11765620‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:25845055‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:30926289‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:10770870‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:27639973‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:17623250‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:17431609‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGACACCGCGCGTAAAACCTGGGATGAACg < 1:1609762‑M2/67‑2 (MQ=255) gCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgcc < 1:407784‑M2/68‑4 (MQ=255) gCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgcc < 1:2167195‑M2/68‑4 (MQ=255) accgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgcc < 1:10026069‑M1/59‑1 (MQ=255) accgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgcc < 1:24504203‑M1/59‑1 (MQ=255) gcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCcgcg < 1:1550039‑M1/62‑1 (MQ=255) gTCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcg > 1:22422010‑M1/1‑13 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCTTAAAACCTGGGATGAACgccgcgg > 1:20247244‑M2/1‑61 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg > 1:29739117‑M2/1‑61 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg > 1:2379472‑M2/1‑61 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcg < 1:14827840‑M2/67‑7 (MQ=255) tCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcgg > 1:679853‑M1/1‑12 (MQ=255) tCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcgg > 1:10102621‑M1/1‑12 (MQ=255) cTGGCCGCGGCTTAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggc > 1:34834554‑M2/1‑59 (MQ=255) ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg < 1:14159157/68‑1 (MQ=255) ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg < 1:26346653/68‑1 (MQ=255) ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg < 1:1021161/68‑1 (MQ=255) gCCTCGGCgttcatcccaggttttacgcgaggtggcgattagatcagctttattcagccgcggccaga < 1:9571015‑M1/68‑61 (MQ=255) gCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggccaga < 1:20645813‑M1/68‑61 (MQ=255) gCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggccaga < 1:9045817‑M1/68‑61 (MQ=255) | ATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGC > CP009273/248231‑248363 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |