| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 353255 | NA (NA) | 8 (0.020) | 6/98 | NT | NA | noncoding (61/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 353266 | NA (NA) | noncoding (72/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 364 total aligned reads displayed.
TTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCC > CP009273/353191‑353322 | ggATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATgcgctacgct < 1:28671258‑M1/68‑11 (MQ=255) ggATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATgcgctacgct < 1:702382‑M1/68‑11 (MQ=255) ccGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTg > 1:29345869/1‑68 (MQ=33) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:20528948/1‑68 (MQ=35) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa < 1:31550421/68‑1 (MQ=35) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa < 1:14784661/68‑1 (MQ=35) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:25929160/1‑68 (MQ=35) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa < 1:22849070/68‑1 (MQ=35) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa < 1:23092950/68‑1 (MQ=35) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa < 1:11734389/68‑1 (MQ=35) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa < 1:794848/68‑1 (MQ=35) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa < 1:8611762/68‑1 (MQ=35) ggCCTCCGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAt < 1:23752751/68‑1 (MQ=255) ggCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAt < 1:15606771/68‑1 (MQ=37) gCCTACGCAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:19010892/1‑66 (MQ=25) ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:19204465/1‑65 (MQ=35) ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:5117926/1‑65 (MQ=35) cTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCtg < 1:30716993/68‑1 (MQ=40) cTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCt < 1:7559668/67‑1 (MQ=40) aCGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCtgtg < 1:9177753/68‑1 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGCTCTGTGTc > 1:34165393/1‑68 (MQ=255) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:33394497/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:30481743/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:2517625/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:6363865/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:5680954/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:15136336/1‑68 (MQ=40) tAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCa > 1:22043633/1‑68 (MQ=40) tAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCa > 1:5877189/1‑68 (MQ=40) tAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCa > 1:4089842/1‑68 (MQ=40) gCACTGAACTCGTAGGCCTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccg > 1:26262767‑M1/1‑22 (MQ=255) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCTCTGATCTGTGTCAGCg > 1:10029816/1‑67 (MQ=255) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg < 1:29817412/67‑1 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:27195696/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:16451508/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:309951/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:6839744/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:12538491/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:12376393/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAGCTGTGTCAGCg > 1:18274535/1‑67 (MQ=25) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAGCTGTGTCAGCg > 1:20799298/1‑67 (MQ=25) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCGGATCTGTGTCAGCg > 1:2563189/1‑67 (MQ=25) cACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:29064147/1‑66 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:3596444/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:13012809/1‑68 (MQ=40) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTAc < 1:9779428/68‑1 (MQ=40) gAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCtgga < 1:3889422/68‑4 (MQ=255) gAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTAcc < 1:24592125/68‑1 (MQ=40) gAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTAcc > 1:18749225/1‑68 (MQ=40) aCTCGTAGGCCTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataag > 1:13726167‑M1/1‑15 (MQ=255) aCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGt > 1:15360362/1‑68 (MQ=40) aCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGt > 1:29384079/1‑68 (MQ=40) aCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGt > 1:20117622/1‑68 (MQ=40) aCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAAAGCCGCTGATCTGTGTCAGAGGCTACCGt > 1:26730989/1‑68 (MQ=14) tCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGa < 1:16026341/68‑1 (MQ=40) tCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGa < 1:18104836/68‑1 (MQ=40) tCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGa < 1:27457009/68‑1 (MQ=40) cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGat < 1:24789829/68‑1 (MQ=40) cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGat < 1:12673353/68‑1 (MQ=40) cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGat > 1:14334563/1‑68 (MQ=40) cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGat > 1:30187568/1‑68 (MQ=40) tAGGCCTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttc > 1:32142975‑M1/1‑10 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattc > 1:31201981/1‑68 (MQ=40) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattc > 1:17063300/1‑68 (MQ=40) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattc > 1:32972106/1‑68 (MQ=40) ggCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat > 1:27151981/1‑68 (MQ=40) gCCTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacg < 1:1148237‑M1/68‑62 (MQ=255) gCCTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacg < 1:17651376‑M1/68‑62 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat > 1:19527842/1‑67 (MQ=40) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat > 1:2803845/1‑67 (MQ=40) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat > 1:14163596/1‑67 (MQ=40) ccTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacg > 1:34678847‑M1/1‑6 (MQ=255) ccTGATgcgctacgcttatcaggcatacgagttcagtgctctacgtaggccggataaggcgttcacg > 1:24934261‑M1/1‑6 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTcattcatt > 1:32013487/1‑67 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:10724929/1‑67 (MQ=40) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:17396327/1‑67 (MQ=40) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat < 1:4150748/66‑1 (MQ=40) cTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgcc > 1:8900843‑M1/1‑5 (MQ=255) cTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgcc > 1:28610753‑M1/1‑5 (MQ=255) cTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgcc > 1:27807811‑M1/1‑5 (MQ=255) cTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgcc > 1:23567748‑M1/1‑5 (MQ=255) cTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgcc > 1:4669904‑M1/1‑5 (MQ=255) cTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgcc > 1:4783269‑M1/1‑5 (MQ=255) cTGATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgcc > 1:14577942‑M1/1‑5 (MQ=255) gATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgccgc < 1:33761824‑M1/68‑66 (MQ=255) gATgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgccgc < 1:11194683‑M1/68‑66 (MQ=255) gATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCg < 1:23986856/68‑1 (MQ=255) gATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCg < 1:12033025/68‑1 (MQ=255) tgcgctacgcttatcaggcctacgagttcagtgctgtacgtaggccggataaggcgttcacgccgca > 1:20068443‑M1/1‑1 (MQ=255) tgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgccgca > 1:21438679‑M1/1‑1 (MQ=255) tgcgctacgcttatcaggcctacgagttcagtgctctacgtaggccggataaggcgttcacgccgca > 1:1088130‑M1/1‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGcc > 1:26392210/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGcc > 1:16193571/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGc < 1:22381536/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGc < 1:21053046/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGc < 1:8788760/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGc < 1:17197692/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTACCGcc > 1:7468526/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTACCGcc > 1:8498592/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAGCTGTGTCAGCGGCTACCGTGATTCATTCCCGcc > 1:16919182/1‑68 (MQ=255) | TTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCC > CP009273/353191‑353322 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |