| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360096 | 345 (0.830) | 361 (0.880) | 22/110 | NT | 47.0% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 475 (1.160) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
Only 100 of 857 total aligned reads displayed.
GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCA > CP009273/360029‑360162 | atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:11502568‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:11687439‑M1/28‑2 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:22698462‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:19081276‑M1/29‑3 (MQ=255) aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc < 1:21891639/68‑1 (MQ=255) ccATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc > 1:2639100/1‑67 (MQ=255) ccATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc > 1:15988215/1‑67 (MQ=255) aTCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCa > 1:18800638/1‑68 (MQ=255) ccAGCGCCACCATCCATTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATAACCAAt > 1:14458165/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:4204365/1‑68 (MQ=255) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 1:804257/1‑68 (MQ=255) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 1:1857957/1‑68 (MQ=255) ccaccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 1:33939286/1‑67 (MQ=255) caccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc > 1:32803515/1‑68 (MQ=255) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAg < 1:2904141/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:32600520/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:8933801/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:820007/68‑1 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa > 1:33154063/1‑68 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa > 1:16847317/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:33567550/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:26133513/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:7401172/1‑68 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggc > 1:29467760/1‑68 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggc > 1:24194334/1‑68 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:19376686/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg < 1:30288815/67‑1 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcggg < 1:10511746/65‑1 (MQ=255) gCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt < 1:17352656/67‑1 (MQ=255) gCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt < 1:3771151/67‑1 (MQ=255) gCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt > 1:2024215/1‑67 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt > 1:25183050/1‑65 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCt < 1:1114540/68‑1 (MQ=255) cGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGc < 1:22277403/68‑1 (MQ=255) cGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGc < 1:10753358/68‑1 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:17105835‑M1/2‑28 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:16168794‑M1/2‑28 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:12202041‑M1/2‑28 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:9611089‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:23575521‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:3595343‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:26665910‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:27091459‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:21570146‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:14031699‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:14909949‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:16588439‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:17678543‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCTGCCCGc < 1:10959511/68‑1 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCAATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGc < 1:29239465/68‑1 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:23352446‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:10001454‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:13273902‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:18127015‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgac > 1:2483482‑M1/1‑24 (MQ=255) tAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGcc < 1:6753129/67‑1 (MQ=255) aGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:2569841‑M1/1‑22 (MQ=255) aGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAc > 1:25470289/1‑67 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:15730174‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:3205090‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:3135408‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:30928284‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:33778018‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:4801827‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:27696518‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:19739958‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:2003548‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgagggtgaaacgact > 1:29792284‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttcagaattattttttcgcgggtgaaacgact > 1:4505840‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAc > 1:34338016/1‑66 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAc > 1:12895934/1‑66 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:24531927‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:22969757‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:27467953‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTc < 1:14628307/68‑1 (MQ=255) aaaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCggg < 1:5831939/68‑1 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt < 1:11938633‑M1/68‑55 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt < 1:7124916‑M1/68‑55 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgta < 1:31682862‑M1/68‑56 (MQ=255) aCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATgg > 1:12391268/1‑39 (MQ=255) aTGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:30080875‑M1/1‑11 (MQ=255) aTGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGt > 1:7796210/1‑68 (MQ=255) aTGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGt > 1:10212705/1‑68 (MQ=255) gaATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaag < 1:690268‑M1/67‑61 (MQ=255) gaATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaag < 1:28240078‑M1/67‑61 (MQ=255) gaATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaag < 1:20766209‑M1/67‑61 (MQ=255) gaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc < 1:34775772/67‑1 (MQ=255) gaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc < 1:21179585/67‑1 (MQ=255) gaATTCCGATCCCCAATTCCTGGCAGTCTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc < 1:23900788/67‑1 (MQ=255) aTTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagcca < 1:32338979‑M1/68‑64 (MQ=255) aTTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagcca > 1:20527913‑M1/1‑5 (MQ=255) aTTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTc > 1:13797690/1‑68 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:21731520‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:9289431‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:15368404‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:5188596‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:28568826‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:33365713‑M1/1‑3 (MQ=255) tCCatcagcttctccttgagaattattttttcgcgggtgaatcgactcctggtttgtacaaagccaga > 1:27890548‑M1/1‑3 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGc < 1:626851/68‑1 (MQ=255) | GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCA > CP009273/360029‑360162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |