New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	576705 =	NA (NA)	4 (0.010)	4/98	NT	NA	coding (416/546 nt)	nohD	DLP12 prophage; DNA packaging protein
	?	CP009273	576725 =	NA (NA)					coding (436/546 nt)	nohD	DLP12 prophage; DNA packaging protein

TGTCGCGGATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCCTGTCGGTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCA  >  CP009273/576642‑576755                                                                |                                                   tggcgcgGATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCCTGTCGGAGCAGCGGCGtttt                                                <  1:31565055/65‑1 (MQ=0)                                              ccgtGTCGGTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATatc   <  1:29183193/65‑1 (MQ=1)                                               ccggTCGGTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATatca  <  1:452148/65‑1 (MQ=1)                                                                |                                                   TGTCGCGGATCGCAGGTGAAATTGCCAGTATTCTCGACGGGATCCCCCTGTCGGTGCAGCGGCGTTTTCCGGAACTGGAAAACCGACATGTTGATTTCCTGAAACGGGATATCA  >  CP009273/576642‑576755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.