| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 603521 | 3 (0.010) | 6 (0.020) | 4/94 | NT | 70.4% | coding (1/1113 nt) | insL1 | IS186 transposase |
| ? | CP009273 | = 603589 | NA (NA) | coding (69/1113 nt) | insL1 | IS186 transposase | |||||
Only 100 of 223 total aligned reads displayed.
GGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATA > CP009273/603454‑603587 | ggggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA > 1:24335949‑M1/1‑68 (MQ=255)ggggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA < 1:10645330‑M1/68‑1 (MQ=255)ggggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA > 1:31644535‑M1/1‑68 (MQ=255)ggggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA < 1:6950840‑M1/68‑1 (MQ=255) gggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA < 1:6062574‑M1/67‑1 (MQ=255) ggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt < 1:1031862/67‑1 (MQ=255) ggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt < 1:7428293/67‑1 (MQ=255) ggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAt < 1:3562875/67‑1 (MQ=255) gAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa > 1:4164121/1‑68 (MQ=40) gAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa > 1:6618516/1‑68 (MQ=40) gAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa > 1:16314886/1‑68 (MQ=40) aGTAATCCCATAAGCGCTACCTTAAGGTTTGTGGTATTACGCGTGATATGATTTAACGTGCCGATGa < 1:3970087/67‑1 (MQ=14) aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:26541487/67‑1 (MQ=39) aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:6605823/67‑1 (MQ=39) aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:17594608/67‑1 (MQ=39) aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:23534913/67‑1 (MQ=39) aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:34466068/67‑1 (MQ=39) gTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt > 1:13020065/1‑68 (MQ=37) gTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt > 1:15683565/1‑68 (MQ=37) gTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt > 1:28103117/1‑68 (MQ=37) gTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt > 1:32965567/1‑68 (MQ=37) gTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt > 1:12252340/1‑68 (MQ=37) aTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAagtatcca < 1:29975633‑M1/68‑9 (MQ=255) aTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAagtatcca < 1:31158487‑M1/68‑9 (MQ=255) aTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc < 1:13566998/68‑1 (MQ=31) gCCTGATATGATTTAACGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctg > 1:11746752‑M1/1‑24 (MQ=255) gATATGATTTAACGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgacca < 1:16729446‑M1/68‑49 (MQ=255) tttAACGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcg > 1:29443227‑M1/1‑13 (MQ=255) aCGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgag < 1:33999581‑M1/68‑60 (MQ=255) aCGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgag < 1:10054480‑M1/68‑60 (MQ=255) aCGTGCCGAagtatccagttcttcgggcttaccaatatgggacagaattgctgacaagttatcgtgag > 1:33465361‑M1/1‑9 (MQ=255) cGTGCCGAagtatccagttcttcgggctttccaatatgggccagaattgctgaccggttatcgtgaga > 1:12808096‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccataattgctgaccagttatcgtgaga < 1:7591172‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:6325970‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:3737376‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:5719552‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:28470884‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:29222940‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:29314572‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:30737765‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:31207906‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:5648930‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:3141001‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:31744946‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:32426374‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:4258142‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:33113821‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:33718176‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:9421023‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:18092369‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:19082157‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:19604795‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:19877502‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:26355945‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:17723270‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:18815374‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:18563379‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:16182371‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:22256401‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:24539927‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:25551333‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:10925718‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:26122300‑M1/68‑61 (MQ=255) cGTGCCGAagtatccacttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:25821461‑M1/68‑61 (MQ=255) cGTGACGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:12203501‑M1/68‑61 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag < 1:26880924‑M1/68‑62 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:25341582‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:9206478‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:8730680‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:2607735‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:7136849‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:21162506‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:15793382‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:18269544‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:23779819‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:640071‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:30209950‑M1/1‑7 (MQ=255) tGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt > 1:5047815‑M1/1‑6 (MQ=255) gCCGAagtatctagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagta < 1:34713292‑M1/68‑64 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagta > 1:33215526‑M1/1‑5 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagta < 1:20695722‑M1/68‑64 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagta > 1:22844356‑M1/1‑5 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:14512888‑M1/67‑63 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:19972210‑M1/67‑63 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:27057362‑M1/67‑63 (MQ=255) gCCGAagtatccagttcttcgggcgtaccaatatgggccagaattgctgaccagttatcgtgagagta < 1:5231467‑M1/68‑64 (MQ=255) gCCGAagtatccagttcttcgggattaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:12909036‑M1/67‑63 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:25143784‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:25968834‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:11591056‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:27731424‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:8478302‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:27287965‑M1/68‑66 (MQ=255) gAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaatt < 1:2157716‑M1/68‑67 (MQ=255) gAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaatt < 1:30903194‑M1/68‑67 (MQ=255) gAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaatt < 1:12478686‑M1/68‑67 (MQ=255) gAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaatt < 1:28857954‑M1/68‑67 (MQ=255) gAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaatt < 1:10542585‑M1/68‑67 (MQ=255) gAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat > 1:20061613‑M1/1‑2 (MQ=255) gAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat > 1:21339373‑M1/1‑2 (MQ=255) | GGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATA > CP009273/603454‑603587 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |