| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 719576 = | 271 (0.650) | 10 (0.030) | 8/94 | NT | 5.3% | coding (295/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| ? | CP009273 | 719613 = | 131 (0.370) | coding (258/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein | |||||
Only 100 of 358 total aligned reads displayed.
TGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACA > CP009273/719509‑719643 | tGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAg > 1:3609462/1‑68 (MQ=255) gaaaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtgg > 1:24721046‑M1/66‑67 (MQ=255) gggAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGggcg > 1:21892981/1‑68 (MQ=255) aaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcg < 1:34011002‑M1/5‑1 (MQ=255) aaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcg > 1:25262186‑M1/64‑68 (MQ=255) aaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcg > 1:4956009‑M1/64‑68 (MQ=255) aaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcg > 1:22184898‑M1/64‑68 (MQ=255) aaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcg > 1:15288414‑M1/64‑68 (MQ=255) aaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcg > 1:20950263‑M1/64‑68 (MQ=255) cgatcccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:3312519‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:4435669‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:17487697‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:4677144‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:20752421‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc < 1:15498587‑M1/7‑1 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc < 1:5697427‑M1/7‑1 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:6100700‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:6821995‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc < 1:12324294‑M1/7‑1 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:8947005‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:25655665‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc < 1:27137118‑M1/7‑1 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc < 1:10232823‑M1/7‑1 (MQ=255) aCCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCa > 1:30545373/1‑67 (MQ=255) aCCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCa > 1:18261529/1‑67 (MQ=255) aCCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCa > 1:1058366/1‑67 (MQ=255) aCCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCa > 1:10041204/1‑67 (MQ=255) taccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGGGCGGCAt > 1:8835826‑M1/59‑67 (MQ=255) ccTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATc > 1:17417875/1‑68 (MQ=255) ccTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATc > 1:1920336/1‑68 (MQ=255) cTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCg > 1:19704538/1‑68 (MQ=255) gcgcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCgaga > 1:11871713/1‑68 (MQ=255) cgcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCgaga > 1:26933331/1‑67 (MQ=255) cgcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCgaga > 1:31073031/1‑67 (MQ=255) cgcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCgaga > 1:7577224/1‑67 (MQ=255) cgcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCgaga < 1:28262154/67‑1 (MQ=255) gcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATc > 1:17669003/1‑68 (MQ=255) tACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCaa > 1:21374876/1‑66 (MQ=255) tACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCaa > 1:18893297/1‑66 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGCGGGCGGCATCGAGATCAAAc > 1:28937752/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:28548665/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:28706295/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:27720192/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:29984030/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:13408743/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:5139888/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:1659644/1‑67 (MQ=255) gtgCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTc > 1:12787704/1‑66 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGTTCGGAGGGCGAGGGCGGCATCGAGATCAAACTCGCt < 1:19084081/67‑1 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCt < 1:6358823/67‑1 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTg > 1:31582659/1‑68 (MQ=255) gcgcCAGTTCGTCCAATAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCt < 1:1646885/67‑1 (MQ=255) gcgcCAGTTCGGCCATTAAGATCATCTCCTTTCGTCGGTCGAGCGCGGCATCGAGATCAAACTCGCt < 1:9626154/67‑1 (MQ=255) gcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGat > 1:32907582/1‑68 (MQ=255) gcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGa < 1:23795913/67‑1 (MQ=255) gcCAGTTCCGCCATTAAGATCAGCGCCTGTGGTAGGGCGAGGGCGGCATCGAGATCAAACTCGCTGa < 1:29669448/67‑1 (MQ=255) ccAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGata > 1:2506719/1‑68 (MQ=255) cAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGata < 1:33759497/67‑1 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGatat > 1:23725223/1‑67 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGatat > 1:21760817/1‑67 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGatat > 1:31384084/1‑67 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGatat > 1:29347866/1‑67 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:13660514/1‑68 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:30360133/1‑68 (MQ=255) cGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccgc < 1:18446772/68‑1 (MQ=255) gTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccgcc < 1:23071079/68‑1 (MQ=255) ctgttctgccgtttaaacgccaggcgtaccgtGGGCGGCGTCGAGGTGAAACTGGCTGGTATgccgc < 1:11573764‑M1/35‑1 (MQ=255) cATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCAc < 1:26656229/68‑1 (MQ=255) tctgccgttaaaacgccaggcgtaccgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCAc > 1:1694264‑M1/29‑67 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:5519802/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:2741585/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:14611519/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:8495471/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:3335050/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:11323853/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:23141409/68‑1 (MQ=255) aaGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTa < 1:33813923/68‑1 (MQ=255) aTCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:30725879/1‑67 (MQ=255) tCAGCTCCGTGCGGCGGGCTAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACgac < 1:14120120/68‑3 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCGACGGTACg > 1:382842/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:10330971/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:10869719/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:22322862/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:650099/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGcg > 1:5382218/1‑67 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg < 1:24236321/68‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg < 1:9243021/68‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:27965086/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg < 1:26013746/68‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:13033640/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:6728393/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:28420062/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg < 1:14371740/68‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg < 1:18124534/68‑1 (MQ=255) gcggcgGGCGCGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTTCGCCTGGCGgttt > 1:26424230/1‑67 (MQ=255) gcggcgGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTa > 1:32143424/1‑68 (MQ=255) gcggcgGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTa > 1:15963736/1‑68 (MQ=255) gcgtaccgtGGGCGGCATCGAGATCAAACTGGGTGTTATGCCGCCCACGGTTCGCCTGGCGTTTTAAc < 1:31826962‑M1/59‑1 (MQ=255) cgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGa < 1:19533465‑M1/65‑1 (MQ=255) cgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAg < 1:34575974/67‑1 (MQ=255) | TGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACA > CP009273/719509‑719643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |