| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1209039 = | 412 (0.990) | 21 (0.060) | 10/92 | NT | 6.7% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 244 (0.710) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
Only 100 of 827 total aligned reads displayed.
TTCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAA > CP009273/1208973‑1209106 | accttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgAc < 1:2856622‑M1/2‑1 (MQ=255)accttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgAc > 1:34473562‑M1/67‑68 (MQ=255) ccttcctgttcgccagcgtctcgtgcttgatcacgacacctcccgcattatgagcagtatgtttgACg < 1:2926501‑M1/3‑1 (MQ=255) ccttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:26801494‑M1/3‑1 (MQ=255) cttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:12915688‑M1/3‑1 (MQ=255) gCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGC > 1:18812136‑M1/1‑68 (MQ=255) gCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGC > 1:31256067‑M1/1‑68 (MQ=255) cctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgcgc < 1:13876895‑M1/7‑1 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:29455644‑M1/61‑68 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:23794812‑M1/61‑68 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:8578228‑M1/61‑68 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:19924537‑M1/61‑68 (MQ=255) tgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCAt < 1:5026582‑M1/9‑1 (MQ=255) gttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCAtt > 1:11545443‑M1/59‑68 (MQ=255) gttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCAtt > 1:3109001‑M1/59‑68 (MQ=255) acaATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATT > 1:25613137‑M1/1‑68 (MQ=255) aTCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCg > 1:458599/1‑68 (MQ=255) aTCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCg > 1:17359514/1‑68 (MQ=255) aTCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCg > 1:10616987/1‑68 (MQ=255) cGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGaa > 1:7046896/1‑68 (MQ=255) gCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGaaaa > 1:14841258/1‑67 (MQ=255) gCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGaaaa > 1:28265544/1‑67 (MQ=255) gCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGaaaa > 1:22930782/1‑67 (MQ=255) tctctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCTCATTTCGAAAAGCg > 1:20271202/1‑68 (MQ=255) ctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAgg > 1:34847069/1‑68 (MQ=255) tctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGt < 1:17705687/68‑1 (MQ=255) tctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGt < 1:33680577/68‑1 (MQ=255) tCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgc < 1:13084684/68‑1 (MQ=255) tCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgc < 1:19309916/68‑1 (MQ=255) aaCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctg < 1:16969582/68‑1 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:18362125/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:27006482/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc < 1:27477975/68‑1 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc < 1:32159134/68‑1 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:29721675/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:195354/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:28880073/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:31646207/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:18066031/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:25948769/1‑68 (MQ=255) tacACTCCATCAGAATGGGTACTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTTCTGCGTAt > 1:15130717/3‑68 (MQ=255) tCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAt > 1:16234296/1‑68 (MQ=255) ccACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAtt < 1:27709258/68‑1 (MQ=255) cACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTc < 1:10009807/68‑1 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa > 1:22034207/1‑68 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa < 1:1907694/68‑1 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa > 1:4747559/1‑68 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTCACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa < 1:27241081/68‑1 (MQ=255) cGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCaa < 1:11181651/68‑1 (MQ=255) gCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAt > 1:2242759/1‑68 (MQ=255) gCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAt < 1:20894196/68‑1 (MQ=255) ccATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAtt > 1:30120827/1‑68 (MQ=255) tcccgcattatgagcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAAt < 1:12311470‑M1/43‑1 (MQ=255) aaTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcg < 1:15865934‑M2/67‑7 (MQ=255) cattatgagcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGcc < 1:33967213‑M1/48‑1 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgcc < 1:1190133‑M2/68‑9 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgcc > 1:30697809‑M2/1‑60 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgcc > 1:23330062‑M2/1‑60 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgcc > 1:12642240‑M2/1‑60 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:5378640‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:13942478‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:3424691‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:6236646‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:3933448‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:25036946‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccg < 1:5609189‑M2/67‑10 (MQ=255) ttcttTCCCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:9560236/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaa > 1:1336464/1‑68 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaa > 1:24102277/1‑68 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:19682792/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:6718767/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:6456541/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:8871226/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:24646252/67‑1 (MQ=255) ttcttTACCGCGCGTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:33035434/67‑1 (MQ=255) gcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACa < 1:12025312‑M1/56‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgtaagcccg > 1:2634440‑M2/1‑51 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:1462744/1‑68 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt < 1:22176346/68‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt < 1:3736718/68‑1 (MQ=255) ccGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt < 1:7295721/68‑1 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgtaagcccggtaa > 1:7865564‑M2/1‑47 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:25271510/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:10160765/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:23131350/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:15370901/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:2050617/68‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:10398750/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:8064021/67‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:32450630/68‑1 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagct > 1:9248560‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:416932‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:14378662‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:1664686‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:21750005‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:5879574‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:30216356‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:4437648‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagaccggtaaagaagcc > 1:23638206‑M1/1‑10 (MQ=255) ACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATaa < 1:21418884‑M1/68‑1 (MQ=255) | TTCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAA > CP009273/1208973‑1209106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |