| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1505831 = | 318 (0.760) | 18 (0.050) | 7/94 | NT | 6.3% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 265 (0.760) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
Only 100 of 515 total aligned reads displayed.
AGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAG > CP009273/1505765‑1505898 | gcagacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttca < 1:24996990‑M1/1‑1 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:5416166/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:33129752/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:31511074/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:29441292/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:27593806/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:7371072/1‑67 (MQ=255)aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:12847672/1‑67 (MQ=255)aGACGGCATAATGCACGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:21708020/1‑67 (MQ=255) gACGGCTTAATGCGCGGTAGCTAACAACCTGAATAAATTTTCTCAGGGGCGCAGGTGTGCCTGCAAg > 1:14046715/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:22852479/1‑67 (MQ=255) aCGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAgcc > 1:20188837/1‑68 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:2473225‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:29010963‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:16180280‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:10550513‑M1/4‑1 (MQ=255) cGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAgcc < 1:18609034/67‑1 (MQ=255) acaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgccg < 1:3001527‑M1/5‑1 (MQ=255) caggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgccgcc < 1:26713572‑M1/7‑1 (MQ=255) caggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgccgcc < 1:6941101‑M1/7‑1 (MQ=255) caggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgccgcc < 1:13760262‑M1/7‑1 (MQ=255) caggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgccgcc < 1:6579238‑M1/7‑1 (MQ=255) caggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgccgc < 1:31083771‑M1/6‑1 (MQ=255) aTAATGCGCGGTAGCTCACAAGCTGAATAAATTTTCTCAGTGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:17018480/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATATATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:34388075/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGccgccg < 1:2131394/67‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:14663038/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:8943938/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:3890075/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:4972457/68‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:19389781‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:23844388‑M1/9‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:628426/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:33929949/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:348677/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:30386881/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:6033368/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:2886358/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:2867402/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:272067/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:526401/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:7117200/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:27363141/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:8221875/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:19876008/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:12696443/1‑68 (MQ=255) gcgGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATgg < 1:32364823/67‑1 (MQ=255) gcgGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGt < 1:31396405/68‑1 (MQ=255) aGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAAc > 1:23397526/1‑68 (MQ=255) aGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAAc > 1:20606696/1‑68 (MQ=255) tCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:32826902/58‑1 (MQ=255) tCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAg > 1:34147966/1‑68 (MQ=255) tCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAg > 1:33485230/1‑68 (MQ=255) acaACGTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga < 1:28402217/68‑1 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga > 1:18083999/1‑68 (MQ=255) aCCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGat > 1:10917625/1‑68 (MQ=255) aCCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGat > 1:11555460/1‑68 (MQ=255) aCCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGat > 1:32706115/1‑68 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata > 1:17684149/1‑68 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata > 1:4701487/1‑68 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata < 1:13581606/68‑1 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata < 1:15760563/68‑1 (MQ=255) ttttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc > 1:4494324/1‑68 (MQ=255) ttttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc > 1:26168512/1‑68 (MQ=255) ttttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc > 1:14431244/1‑68 (MQ=255) tttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggca < 1:24566209/68‑1 (MQ=255) tcttactcctgtcgtaattaattgttcAGCCGCCGTCTATGGTTAAAGAAGGAGATATTTTTacggc < 1:790929‑M1/40‑1 (MQ=255) tcttactcctgtcgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc < 1:10079949‑M1/40‑1 (MQ=255) tcttactcctgtcgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc < 1:21027999‑M1/40‑1 (MQ=255) tcAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggcacggc > 1:25246160/1‑68 (MQ=255) tcAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggcacggc > 1:1325317/1‑68 (MQ=255) cAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:27013143/68‑1 (MQ=255) cAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:12291807/68‑1 (MQ=255) tcctgtcgtaattaattgttcAGCCGCCGTCTTTGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:1136451‑M1/46‑1 (MQ=255) cGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa < 1:24288196/67‑1 (MQ=255) cGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa < 1:34641044/67‑1 (MQ=255) cGAAGGGGTGCCTGCAAGCCGCCGTCTATGGGTAAACACGGAGATATTTTTACGGCACGGCGGCTGa < 1:29870585/67‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGAAATTTTTACGGCACGGCGGCTGAACa < 1:22603663/67‑1 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:28032777/1‑68 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:1640146/1‑68 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:11161063/1‑68 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:2196530/1‑68 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:32335231/1‑68 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:30739934/1‑68 (MQ=255) gtgtGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt > 1:16804609/1‑68 (MQ=255) ttaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatta < 1:22164253‑M1/58‑1 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatta > 1:970848/1‑68 (MQ=255) gtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatta < 1:4214329/67‑1 (MQ=255) aattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaat < 1:7667993‑M1/60‑1 (MQ=255) ccTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaatt > 1:29278018/1‑67 (MQ=255) ccTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaatt > 1:12016508/1‑67 (MQ=255) cTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTAc > 1:25379912/1‑68 (MQ=255) cTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTAc > 1:10362981/1‑68 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGATATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:8743159/68‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg > 1:31842959/1‑68 (MQ=255) tGCAAGCCGCCGTCTATGGTAAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:23042820/68‑1 (MQ=255) cAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGAc > 1:5735412/1‑68 (MQ=255) cAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGAc > 1:160845/1‑68 (MQ=255) cAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGAc > 1:15108681/1‑68 (MQ=255) AGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAg < 1:32569128‑M1/68‑1 (MQ=255) | AGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAG > CP009273/1505765‑1505898 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |