| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1641311 = | 391 (0.940) | 17 (0.050) | 8/90 | NT | 5.4% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 276 (0.820) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
Only 100 of 490 total aligned reads displayed.
TTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCG > CP009273/1641244‑1641376 | aaaagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtcgcg > 1:7619947‑M1/65‑68 (MQ=255) cGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGt > 1:31424482/1‑68 (MQ=255) cGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCCCCCAGACTGACTCAGCGCGt > 1:2788863/1‑68 (MQ=255) ggACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt < 1:8878011/68‑1 (MQ=255) aagattgaaaccaagatcgattcggttgagtgcatatccattcatagggtagattcttaagtCGCGtt > 1:18213683‑M1/63‑68 (MQ=255) aCATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGttt < 1:32642139/67‑1 (MQ=255) cATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt > 1:296498/1‑65 (MQ=255) cATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGtt > 1:27180181/1‑65 (MQ=255) cATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCt < 1:425161/68‑1 (MQ=255) gCATAGGCTATTTACCATAACGCCTCTTTACGCGCACCGCCCAGATTGACTCAGCGCGTTTCTGCCat > 1:30225885/1‑68 (MQ=255) gCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCat > 1:10440061/1‑68 (MQ=255) gCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCat > 1:10021360/1‑68 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGAGTGACTCAGCGCGTTTCTGGCata > 1:15157755/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCatat < 1:18708639/68‑1 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:30031952/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:3756214/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:4885783/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:32243499/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:31140413/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:32430777/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:7958679/1‑67 (MQ=255) aTAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCata > 1:28163531/1‑67 (MQ=255) aGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATc > 1:14282589/1‑67 (MQ=255) gCTATTTACCATAACGCCTCATTAGGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:24934409/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATgccc > 1:23821198/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:20957726/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:31972494/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:10841691/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:19445863/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:5439375/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcccc > 1:17758838/1‑68 (MQ=255) gCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCCCGTTTCTGGCATATcccc > 1:22382706/1‑68 (MQ=255) gCTATTTACCATAACGCCGCATTACGCGCGCCGCCCAGACTGACTCAGCGCGTTTCTGGCATATcacc > 1:11932146/1‑68 (MQ=255) gCTATTTACCATAACGCATCATTACGCGCACAGCCCAGACTGACTCAGCGCGTTTCTGGAATATcacc > 1:17268588/1‑68 (MQ=255) cTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg > 1:29262873/1‑68 (MQ=255) cTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg > 1:13318240/1‑68 (MQ=255) tATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCgg < 1:34447217/68‑1 (MQ=255) tATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg < 1:33188512/67‑1 (MQ=255) tATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg < 1:24591151/67‑1 (MQ=255) tATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCg < 1:13653466/67‑1 (MQ=255) aTTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGt < 1:2736865/68‑1 (MQ=255) tttACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTa < 1:27570182/68‑1 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:2026922/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:12829345/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:25923543/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:6452552/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:11321947/1‑68 (MQ=255) tACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:33379637/1‑68 (MQ=255) aCCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:4625515/1‑67 (MQ=255) aCCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:15083539/1‑67 (MQ=255) aCCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTaaa > 1:3371125/1‑67 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAAc < 1:19965387/68‑1 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAAc > 1:16230477/1‑68 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAAc > 1:31696735/1‑68 (MQ=255) ccATAACGCCTCATTACGCGCACCGCCCAGACTGACTAAGCGCGTTTCTGGCATATCCCCGGTAAAAc > 1:6245412/1‑68 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa < 1:23336448/68‑1 (MQ=255) aTAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACaa > 1:20682717/1‑68 (MQ=255) cGCCTCATTACGCGCACCGCCCAGACTGACTCAGTGCGTTTCTGGCATATCCCCGGTAAAACAAGTaa < 1:18362835/68‑1 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:11809652/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:5882503/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:34182238/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:8198421/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:2533645/1‑68 (MQ=255) gCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAc > 1:15760964/1‑68 (MQ=255) ttACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAacc > 1:2308492/1‑67 (MQ=255) tccattcatagggtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAacca < 1:32773145‑M1/41‑1 (MQ=255) tACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAacca > 1:16765977/1‑67 (MQ=255) aCGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAaccac > 1:30839163/1‑67 (MQ=255) gcgcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCg > 1:2430708/1‑68 (MQ=255) tcatagggtagattcttaagtCGCGTTTCTGGCATATCCCCGGTAAATCAAGTAACAAACCACCCGaa < 1:7251386‑M1/47‑1 (MQ=255) gcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTATCAAACCACCCGaa > 1:9008825/1‑68 (MQ=255) gcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaa > 1:13937828/1‑68 (MQ=255) gcACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaa < 1:31252927/68‑1 (MQ=255) cACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaaa > 1:25201627/1‑68 (MQ=255) aCCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGaaaa < 1:21391172/68‑1 (MQ=255) ccAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCCCCCGAAAATGAac > 1:17609572/1‑68 (MQ=255) ccAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAac > 1:1705155/1‑68 (MQ=255) cAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAaca < 1:30616150/68‑1 (MQ=255) cAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAaca < 1:12517689/68‑1 (MQ=255) actgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACC‑CCCGCAAAAGAACACCAg > 1:13093766/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACAcc < 1:28971207/66‑1 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACAcc < 1:33970745/66‑1 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCa > 1:6788099/1‑67 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:10570627/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:9212913/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:9608368/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:9884836/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:34875254/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:26580168/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:22098131/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:20515419/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAg > 1:19060784/1‑68 (MQ=255) ctgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAAAAACCACCCGAAAATGAACACCAg > 1:32884831/1‑68 (MQ=255) tgactCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGa > 1:26794513/1‑68 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:30285741/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:28616852/1‑67 (MQ=255) tCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAc > 1:8505056/1‑67 (MQ=255) CGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCCCCCGAAAATGAACCCCAGAAAcgcg < 1:21591339‑M1/66‑1 (MQ=255) CGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAAcgcg < 1:26140652‑M1/66‑1 (MQ=255) CGCGTTTCTGGAATATCCCCGGTAAAACAAGTAACAAACCACCCGATAATGAAGACCAGAACcgcg < 1:14572991‑M1/66‑1 (MQ=255) | TTAGCGGACATTAGCATAGGCTATTTACCATAACGCCTCATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCG > CP009273/1641244‑1641376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |