| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2006338 = | 369 (0.880) | 17 (0.050) | 9/92 | NT | 6.4% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | CP009273 | 2006392 = | 196 (0.570) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
Only 100 of 486 total aligned reads displayed.
CATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGG > CP009273/2006271‑2006404 | cATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCtgcgtgc > 1:26683214/1‑68 (MQ=255) atatCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCtgcgtgc < 1:17019193/67‑1 (MQ=255) tatCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCgg < 1:16502184/68‑1 (MQ=255) tatCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCgg < 1:22659988/68‑1 (MQ=255) atCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCggg < 1:23895181/68‑1 (MQ=255) acaggctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGc < 1:10019529‑M1/5‑1 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCa > 1:26149834/1‑67 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCa > 1:32508455/1‑67 (MQ=255) aggctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:30209282‑M1/6‑1 (MQ=255) tcatcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGc < 1:24945897/67‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:24548426‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:2539550‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:10539744‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:17558565‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:28161275‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:6956551‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:24305409‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:7374482‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:33040197‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:33296976‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:18944893‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgcagcaaccgaccattagttttgcCGGGCa < 1:27160748‑M1/6‑1 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa > 1:9267286‑M1/59‑64 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa > 1:3639547‑M1/59‑64 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCAGc > 1:15096638‑M1/59‑66 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGCGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:21505289/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:15598667/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:14430225/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:31714544/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:13169548/68‑1 (MQ=255) tcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGtt > 1:28866699/1‑68 (MQ=255) tcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGtt < 1:33780060/68‑1 (MQ=255) tcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGtt > 1:19254623/1‑68 (MQ=255) acaTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtg > 1:25621264/1‑68 (MQ=255) acaTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtg > 1:9521955/1‑68 (MQ=255) acaTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtg > 1:11753126/1‑68 (MQ=255) cctCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:27628541/66‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt > 1:4181007/1‑68 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:1289360/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:3131620/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt > 1:34050991/1‑68 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:29509295/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:5693949/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:8520686/68‑1 (MQ=255) aTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgtg < 1:1862922/68‑1 (MQ=255) aTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgtg < 1:11318033/68‑1 (MQ=255) tCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTgtgt < 1:34255712/68‑1 (MQ=255) tCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTgtgt < 1:15880349/68‑1 (MQ=255) cGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTa > 1:14700512/1‑68 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc > 1:7154624/1‑67 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:32189999/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:22230166/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:17172626/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:27063158/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCa < 1:19843860/68‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGCTTGTGTATc < 1:24007137/67‑1 (MQ=255) tAACGCCACGCCGTGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCAc < 1:20141824/68‑1 (MQ=255) cgccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTaa < 1:23591937/68‑1 (MQ=255) cgccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTaa > 1:8282606/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTa > 1:12403351/1‑60 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:7552118/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:1098338/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:32334865/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:31007744/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:17441486/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:4513227/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:25837742/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:34669773/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCATGCGTGCGGGAAGCAGTTAGAGTATCACTAAt > 1:29222011/1‑68 (MQ=255) ccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:1348244/1‑67 (MQ=255) cacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGc < 1:17756893/68‑1 (MQ=255) gccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGAt < 1:14192868/68‑1 (MQ=255) gccGGGATCACCTAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGAt < 1:28319349/68‑1 (MQ=255) aggaatcactgccgcaaccgaccattagttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGa < 1:1547619‑M1/34‑1 (MQ=255) atcactgccgcaaccgaccattagttttgcCGGGGAGCGGTTTGTGTATCACTAATGCGATCGAgcgc < 1:22089760‑M1/38‑1 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:10169973/68‑1 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:27965902/68‑1 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:17885665/68‑1 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:22457909/68‑1 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:23148226/68‑1 (MQ=255) ccGAGAGTGAATTTGTCTGCCTGCGGCCGGGCAGCTGTTTGTGGAACACTAATGCGCGCGAGCgcggc < 1:30834990/68‑1 (MQ=255) ctgccgcaaccgaccattagttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggcg < 1:19541044‑M1/42‑1 (MQ=255) cGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggcg > 1:11587975/1‑68 (MQ=255) gagaGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGt > 1:10358935/1‑68 (MQ=255) gagaGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGt > 1:21375977/1‑68 (MQ=255) gagaGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGt < 1:6374238/68‑1 (MQ=255) gagaGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTGGTGAATCACTAATGCGATCGCGCGCGGCGt < 1:8752011/68‑1 (MQ=255) gTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTGTGTGTATCACTAATGCGATCGAGCGCGGCGTGCa > 1:16785974/1‑67 (MQ=255) ccgaccattagttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTg < 1:18287507‑M1/50‑1 (MQ=255) aTTTTTCTGCCTGCGAGCGGGCAGCTGTTTGTGTCTCACAAATGCGATCGAGCGCGGCGTGCAGCTGc < 1:12032109/68‑1 (MQ=255) tttttCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGc > 1:21809722/1‑67 (MQ=255) cgaccattagttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGCGCGCGGCGTGCAGCTGc < 1:319629‑M1/51‑1 (MQ=255) tttCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCg < 1:6623008/68‑1 (MQ=255) gttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaa < 1:7805394‑M1/59‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaaa < 1:13765274/67‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAAc < 1:489393/68‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAAc < 1:27362134/68‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAAc < 1:32769353/68‑1 (MQ=255) tgcgtgcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACt < 1:16212698/68‑1 (MQ=255) CGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATgg < 1:20679802‑M1/67‑1 (MQ=255) | CATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGG > CP009273/2006271‑2006404 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |