| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2787501 | NA (NA) | 4 (0.010) | 4/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
Only 100 of 504 total aligned reads displayed.
CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATG > CP009273/2787434‑2787568 | cGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT < 1:9388125‑M1/68‑1 (MQ=255)cGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT < 1:18404255‑M1/68‑1 (MQ=255) aTAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAg > 1:6342117/1‑68 (MQ=255) aTAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATATATGTTGGCCGGGTAAg > 1:16400549/1‑68 (MQ=255) tAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAg > 1:5457448/1‑67 (MQ=255) gCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCg > 1:3839286/1‑66 (MQ=255) gCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:28881863/1‑68 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:5615545/1‑67 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:30061260/1‑67 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:14265721/1‑67 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:33590410/1‑67 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:15645459/1‑67 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa < 1:26238686/67‑1 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:34288751/1‑67 (MQ=255) gTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGc < 1:21572973/68‑1 (MQ=255) tACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGc < 1:30264263/68‑1 (MQ=255) aCGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGct < 1:312760/68‑1 (MQ=255) gccgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGctct < 1:18181217/68‑1 (MQ=255) gccgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGctc > 1:26962554/1‑67 (MQ=255) gccgcATCCGACAATCTGTACGTGAACAGGAACAAATCTATGTTGGCCGGGTAAGGCGGAGCCGctc > 1:15094756/1‑67 (MQ=255) ccgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGctct > 1:34549958/1‑67 (MQ=255) aTCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCgg < 1:14460394/67‑1 (MQ=255) tCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTcacgcgtataattgttattgat > 1:31538613‑M1/1‑46 (MQ=255) ccGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCaa < 1:6866107/68‑1 (MQ=255) aTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGaa > 1:20105876/1‑68 (MQ=255) aTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGaa > 1:5111637/1‑68 (MQ=255) tCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGaa > 1:13518376/1‑67 (MQ=255) tCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAAt < 1:14863172/68‑1 (MQ=255) tCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAAt < 1:6052675/68‑1 (MQ=255) cTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATc < 1:16688950/68‑1 (MQ=255) tGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCa < 1:3660163/68‑1 (MQ=255) tGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCa < 1:13928740/68‑1 (MQ=255) aCGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAAt < 1:4570492/67‑1 (MQ=255) aCGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa < 1:21384398/68‑1 (MQ=255) cGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa > 1:22204427/1‑67 (MQ=255) cGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa > 1:2721501/1‑67 (MQ=255) cGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa > 1:12437965/1‑67 (MQ=255) tGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCGATAACa > 1:27915570/1‑68 (MQ=255) tGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa > 1:9729781/1‑68 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACaa < 1:794701/68‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:22490585/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:22914635/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:23663783/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:33341630/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:31864737/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:9549381/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:11203829/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:8676851/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:2187255/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:5764799/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:29403071/67‑1 (MQ=255) gAACACGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACaa < 1:17856706/68‑1 (MQ=255) aaCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAt > 1:666226/1‑68 (MQ=255) aaCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAt > 1:16844941/1‑68 (MQ=255) aaCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAt < 1:3079531/68‑1 (MQ=255) aaCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAt > 1:5163976/1‑68 (MQ=255) aaCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAt > 1:27534453/1‑68 (MQ=255) aaCAGGAACAAATCTATGTACGCCGGGTAAGTCGCAGCCGATCTCCGGCAAAAAGAATCAATAACaaa > 1:10385675/1‑67 (MQ=255) acgggAAGAAATCTATGTTGGCCGGGTAACGCGGAGCCGCTCTCCGGCAAAATGAATCAATAACAAtt < 1:23861850/65‑1 (MQ=255) aCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAtt > 1:20441182/1‑68 (MQ=255) aCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAtt < 1:8549989/68‑1 (MQ=255) aagaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATAc < 1:10682947/67‑1 (MQ=255) aagaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATAc < 1:3501560/67‑1 (MQ=255) agaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATAcgc > 1:12925615/1‑68 (MQ=255) aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATTACAATTATACGCGTg > 1:10105291/1‑67 (MQ=255) aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:1047519/1‑67 (MQ=255) aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:4129660/1‑67 (MQ=255) aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:24225500/1‑67 (MQ=255) aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:12191344/1‑67 (MQ=255) aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:11366517/1‑67 (MQ=255) aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:7148683/1‑67 (MQ=255) aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:28415058/1‑67 (MQ=255) tCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGa < 1:22653666‑M2/67‑2 (MQ=255) tCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGa < 1:16110835‑M2/67‑2 (MQ=255) tCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGa < 1:26587292‑M2/67‑2 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:8259430‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:29312469‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc > 1:30862748‑M2/1‑61 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:16936216‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:32282879‑M2/68‑8 (MQ=255) ggCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGcgcg < 1:13204581/68‑1 (MQ=255) ggcggGTcacgcgtataattgttattgattatttttgccggagagcggctccgccttaccctgccaac < 1:25126567‑M1/66‑62 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:4300928‑M1/68‑62 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:4817876‑M1/68‑62 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:29933413‑M1/68‑62 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccgtacccggccaac > 1:24929936‑M1/1‑7 (MQ=255) ccGGGTcacgcgtataattgttattgattctttttgccggagcgcggctccgccttacccggccaaca > 1:29218449‑M1/1‑6 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATAGGCGTGACCCGGCGCggg > 1:20969375/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:15282070/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:19137638/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:25708830/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCgg < 1:11652059/67‑1 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCgg < 1:25366070/67‑1 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCgg < 1:3291088/67‑1 (MQ=255) cGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaacat < 1:1599781‑M1/68‑64 (MQ=255) cGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggccaacat > 1:19318084‑M2/1‑55 (MQ=255) gggTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGaa < 1:7434574/68‑1 (MQ=255) gTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaacataga > 1:24443929‑M1/1‑2 (MQ=255) tcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaacataga < 1:17351483‑M1/67‑67 (MQ=255) tAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggccaacataga > 1:18819330‑M2/1‑51 (MQ=255) | CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATG > CP009273/2787434‑2787568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |