| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2791412 = | NA (NA) | 5 (0.010) | 3/100 | NT | NA | noncoding (1/30 nt) | REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 2791442 = | NA (NA) | intergenic (+39/+8) | ygaP/stpA | DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated | |||||
Only 100 of 417 total aligned reads displayed.
GCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACC > CP009273/2791345‑2791479 | cgaagccaattgctcaggcgctggcagaaggtaaatctctcgacgatttcctgatctaattactgagg > 1:18576317‑M1/68‑68 (MQ=255) gaagccaattgctcaggcgctggcagaaggtaaatctctcgacgatttcctgatctaattactgagg < 1:33395962‑M1/1‑1 (MQ=255) gaagccaattgctcaggcgctggcagaaggtaaatctctcgacgatttcctgatctaattactgagg < 1:7907882‑M1/1‑1 (MQ=255) ggTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGcc > 1:31282225/1‑68 (MQ=255) gccaattgctcaggcgctggcagaaggtaaatctctcgacgatttcctgatctaattactgagGCCgg < 1:10929321‑M1/5‑1 (MQ=255) gccaattgctcaggcgctggcagaaggtaaatctctcgacgatttcctgatctaattactgagGCCgg < 1:32719888‑M1/5‑1 (MQ=255) ttttGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCgg < 1:23146883/67‑1 (MQ=255) gtgtAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg < 1:487413/68‑1 (MQ=255) gtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg < 1:15700855/68‑1 (MQ=255) gtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg < 1:32806987/68‑1 (MQ=255) gtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg < 1:13288610/68‑1 (MQ=255) gtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg < 1:22699349/68‑1 (MQ=255) gtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg < 1:29374660/68‑1 (MQ=255) gtgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg < 1:11194101/68‑1 (MQ=255) tgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg > 1:13392826/1‑67 (MQ=255) tgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg > 1:33789293/1‑67 (MQ=255) tgGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGAcgcg > 1:1474842/1‑67 (MQ=255) ggAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGcc < 1:33821270/68‑1 (MQ=255) ggAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGcc < 1:20626793/68‑1 (MQ=255) ggAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGcc < 1:31432768/68‑1 (MQ=255) ggAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGcc < 1:27382081/68‑1 (MQ=255) ggAAGGGCAAGGTTGGCAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGcc < 1:8816786/68‑1 (MQ=255) aTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCt < 1:6157197/67‑1 (MQ=255) aTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTa > 1:13732557/1‑68 (MQ=255) aTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTa > 1:5757291/1‑68 (MQ=255) aTGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTa > 1:19229519/1‑68 (MQ=255) aaGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTagcagc < 1:1254566/68‑1 (MQ=255) aaGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTagcagc > 1:18712175/1‑68 (MQ=255) aaGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTagcag < 1:12914965/67‑1 (MQ=255) gttgttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGAc > 1:4971439/1‑68 (MQ=255) ttgttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACa > 1:21832589/1‑68 (MQ=255) ttgttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACa > 1:4133346/1‑68 (MQ=255) ttgttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACa > 1:29264482/1‑68 (MQ=255) tgttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACa < 1:2008797/67‑1 (MQ=255) tgttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACa < 1:19609194/67‑1 (MQ=255) tgttAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACa < 1:24343563/67‑1 (MQ=255) aGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCg > 1:20972780/1‑67 (MQ=255) aGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCg > 1:34779303/1‑67 (MQ=255) aGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCg > 1:4345195/1‑67 (MQ=255) ggtaaatctctcgacgatttcctgatctaattactgagGCCGGACGCGCCCTAGCAGCGACATCCgg < 1:25523698‑M1/29‑1 (MQ=255) gATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCgg > 1:14524728/1‑67 (MQ=255) gATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCgg > 1:2627741/1‑67 (MQ=255) gATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCgg > 1:12174469/1‑67 (MQ=255) gATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCgg > 1:5331250/1‑67 (MQ=255) tAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGcc < 1:16068079/67‑1 (MQ=255) tAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGcc > 1:14020457/1‑67 (MQ=255) tAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCt < 1:6010699/68‑1 (MQ=255) aaGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTc < 1:33023685/68‑1 (MQ=255) aaGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTc > 1:11557715/1‑68 (MQ=255) aaGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTc > 1:9630801/1‑68 (MQ=255) aGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCa < 1:18022012/68‑1 (MQ=255) aGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCa > 1:10039602/1‑68 (MQ=255) aGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCa < 1:21979255/68‑1 (MQ=255) atctctcgacgatttcctgatctaattactgagGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAg < 1:8191891‑M1/35‑1 (MQ=255) aTGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGt > 1:3979891/1‑68 (MQ=255) aTGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGt > 1:19426828/1‑68 (MQ=255) aTGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGt > 1:29984291/1‑68 (MQ=255) aTGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGt > 1:15225113/1‑68 (MQ=255) aTGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGt > 1:27923640/1‑68 (MQ=255) aTGCAGTGGAACCATCGTGCTTGAGAAGCGAGGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGt < 1:10382012/68‑1 (MQ=255) tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAg < 1:27259908/66‑1 (MQ=255) tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAg < 1:21405004/66‑1 (MQ=255) tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGt < 1:27174041/67‑1 (MQ=255) tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGt < 1:3044734/67‑1 (MQ=255) tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGt < 1:16815237/67‑1 (MQ=255) tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGt < 1:19777320/67‑1 (MQ=255) tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGt < 1:21253712/67‑1 (MQ=255) tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGt < 1:24796624/67‑1 (MQ=255) tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGt < 1:23813078/67‑1 (MQ=255) tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTa > 1:17120542/1‑68 (MQ=255) tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTa < 1:18921790/68‑1 (MQ=255) tGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGACTCAGTa > 1:1352582/1‑68 (MQ=255) gCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTaa > 1:22855040/1‑68 (MQ=255) gCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTaa > 1:17610428/1‑68 (MQ=255) gCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTaa < 1:3705125/68‑1 (MQ=255) gCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTaa < 1:3359088/68‑1 (MQ=255) gCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTaa < 1:8619703/68‑1 (MQ=255) gCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTaa > 1:31212137/1‑68 (MQ=255) ggAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGa < 1:12474493/68‑1 (MQ=255) ggAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGa < 1:9097970/68‑1 (MQ=255) ggAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGa < 1:702324/68‑1 (MQ=255) cAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAgg < 1:15811146/68‑1 (MQ=255) cAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAgg < 1:16353727/68‑1 (MQ=255) cGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAAt > 1:24991369/1‑56 (MQ=255) cGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGaaa > 1:8116177/1‑68 (MQ=255) cGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGaaa > 1:24078591/1‑68 (MQ=255) cGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGaaa > 1:26467627/1‑68 (MQ=255) aGCTTGAGAAGAGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAAtc > 1:25314563/1‑68 (MQ=255) gaAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgaga > 1:11722932/1‑68 (MQ=255) gaAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgaga > 1:7672835/1‑68 (MQ=255) gaAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgaga > 1:7514057/1‑68 (MQ=255) gaAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgaga > 1:6365270/1‑68 (MQ=255) gaAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgaga > 1:21761253/1‑68 (MQ=255) gaAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgaga > 1:22270332/1‑68 (MQ=255) gaAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgaga > 1:3181998/1‑68 (MQ=255) aGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgagaga < 1:34150403/68‑1 (MQ=255) aGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCgagag < 1:30828455/67‑1 (MQ=255) GCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTa < 1:18384857‑M1/66‑1 (MQ=255) GCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTAcc > 1:29642311‑M1/1‑68 (MQ=255) GCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGGCGAGAGATTTAcc > 1:32398387‑M1/1‑68 (MQ=255) | GCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGACGCGCCCTAGCAGCGACATCCGGCCTCAGTAATTAGATCAGGAAATCGTCGAGAGATTTACC > CP009273/2791345‑2791479 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |