| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3348965 | 411 (0.990) | 25 (0.070) | 12/96 | NT | 6.6% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 352 (0.980) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
Only 100 of 743 total aligned reads displayed.
TCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAC > CP009273/3348898‑3349031 | tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:2022624‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:1572478‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:5709420‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:14781766‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:14542028‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:13614711‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:21872925‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG > 1:11602939‑M1/1‑68 (MQ=255) cGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGgga < 1:23251117/68‑1 (MQ=255) cGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGgga < 1:30112047/68‑1 (MQ=255) cGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGgga < 1:27933675/68‑1 (MQ=255) cGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGgga < 1:15432754/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:21310181/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:28659067/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:4754010/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:1788300/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:23657122/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:23832526/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:28075367/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:24122543/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:24451658/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:31176419/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:7925361/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:10828633/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:12384954/68‑1 (MQ=255) aaCGAAACCGGCTCTGACCCCAGTTCGATGGATAACATGCTGGAACTGCTGCTTGCAGGCGggatgga < 1:25126286/68‑1 (MQ=255) tctGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCgcgc < 1:11906848/68‑1 (MQ=255) tctGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCgcgc < 1:29625819/68‑1 (MQ=255) cTCCAGTTCGATGGATAATATGCGGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc < 1:75326/68‑1 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCGGGCGGGtggttcgtatagacgcatggc > 1:26892045‑M1/1‑46 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATg < 1:20633791/67‑1 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc < 1:27627633/68‑1 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc < 1:6716071/68‑1 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc < 1:13883161/68‑1 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc < 1:6461966/68‑1 (MQ=255) ccAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCTCCATGCGt < 1:12680995/68‑1 (MQ=255) ccAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGt < 1:5859397/68‑1 (MQ=255) ccAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGt < 1:32346972/68‑1 (MQ=255) ccAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGt < 1:26230123/68‑1 (MQ=255) ccAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGt < 1:12204019/68‑1 (MQ=255) ccAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGt < 1:25422792/68‑1 (MQ=255) cAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTc < 1:16528778/68‑1 (MQ=255) cAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTc < 1:31480028/68‑1 (MQ=255) ttCGATGGATAACATGCTGGAACTGCAGCTTGCAGGCGGTATTGATATCATCCGCGCCATGCGTCTAt < 1:34717314/68‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:30753683/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:31709937/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:21011688/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:24878289/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:32683273/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:9335009/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:22408093/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:6137569/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:4417272/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:3705241/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:34189156/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAtt > 1:22177481/1‑68 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAtt > 1:33311890/1‑68 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAt < 1:3861652/67‑1 (MQ=255) aTGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGt > 1:17239062/1‑68 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgc > 1:25584914‑M2/1‑63 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgc > 1:30549053‑M2/1‑63 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:25863054‑M2/67‑5 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:1753440‑M2/67‑5 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:12560080‑M2/67‑5 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:3365245‑M2/67‑5 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctg < 1:33913761‑M1/67‑45 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:4836756‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:14174215‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:29760110‑M2/1‑59 (MQ=255) aaCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgcca > 1:27453468‑M2/1‑56 (MQ=255) aaCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAg > 1:29210107/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:9550582/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:28429712/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:26484414/1‑68 (MQ=255) ctgctgctgGCAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctggcaga > 1:11242086‑M1/1‑18 (MQ=255) ctgctgctgGCAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagca > 1:5268947‑M1/1‑18 (MQ=255) tgctgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaac > 1:7121887/1‑68 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaa > 1:16295569/1‑67 (MQ=255) tgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCg > 1:193173/1‑68 (MQ=255) ccggcgGGtggtactaatagccgcatggcgcggatgatatccctcccgcctgccagccgcaggtcca > 1:15529657‑M1/3‑8 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttcca > 1:1986431‑M1/1‑8 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttcca > 1:1043062‑M1/1‑8 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCTGa < 1:9099693/67‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGat > 1:12979530/1‑68 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:18645199/67‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:21633810/67‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:22639440/67‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:16105115/67‑1 (MQ=255) aGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGat < 1:26070343/67‑1 (MQ=255) gCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat > 1:23087476‑M1/1‑5 (MQ=255) cGGGtggtactaatagaggcatggcgcggatgatatccatcccgcctgccagcagcagttccagc < 1:27046504‑M1/65‑62 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagc < 1:18104502‑M1/65‑62 (MQ=255) cGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgccagcagcagttccagcat > 1:16942838‑M2/1‑40 (MQ=255) cGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgccagcagcagttccagcat > 1:18382698‑M2/1‑40 (MQ=255) gggtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcatgt > 1:15181695‑M1/1‑3 (MQ=255) gggtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcatgt < 1:28896620‑M1/68‑66 (MQ=255) gggtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcatgt < 1:10292678‑M1/68‑66 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:8813683/67‑1 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:18959542/67‑1 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:10000342/67‑1 (MQ=255) | TCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAC > CP009273/3348898‑3349031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |