New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3920778 =283 (0.680)30 (0.090) 8/88 NT 10.4% coding (264/993 nt) asnA asparagine synthetase A
?CP009273 3920817 = 297 (0.910)coding (303/993 nt) asnA asparagine synthetase A

Only 100 of 632 total aligned reads displayed.

AGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCA  >  CP009273/3920711‑3920843
                                                                   |                                                                 
cattacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgg                                                                   >  1:20100749‑M1/68‑68 (MQ=255)
 attacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcggg                                                                  <  1:11332811‑M1/2‑1 (MQ=255)
 attacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcggg                                                                  <  1:17799320‑M1/2‑1 (MQ=255)
   tacgcgttcccagtccccctggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGc                                                                >  1:25061838‑M1/65‑68 (MQ=255)
   tacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGc                                                                <  1:16444385‑M1/4‑1 (MQ=255)
   tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGC                                                                <  1:28229592‑M1/68‑1 (MQ=255)
   tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGC                                                                <  1:26377528‑M1/68‑1 (MQ=255)
   tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGC                                                                <  1:16499175‑M1/68‑1 (MQ=255)
   tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGC                                                                <  1:14919307‑M1/68‑1 (MQ=255)
   tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGG                                                                 <  1:21092503‑M1/67‑1 (MQ=255)
   tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGG                                                                 <  1:4657128‑M1/67‑1 (MQ=255)
   tCGAAGTGGTGCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGG                                                                 <  1:13389426‑M1/67‑1 (MQ=255)
    acgcgttcccagtcccactggtcaacatagaccgagtgcaaccgggaaagacggtcttaagcgggccc                                                               <  1:32713896‑M1/5‑4 (MQ=255)
     cgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGa                                                              <  1:2718876‑M1/6‑1 (MQ=255)
     cgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGa                                                              <  1:4424227‑M1/6‑1 (MQ=255)
     cgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGa                                                              <  1:7956674‑M1/6‑1 (MQ=255)
      gcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGaa                                                             >  1:26950857‑M1/62‑68 (MQ=255)
       cgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAg                                                            <  1:14728003‑M1/8‑1 (MQ=255)
       cgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAg                                                            <  1:3789736‑M1/8‑1 (MQ=255)
       cgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAg                                                            <  1:17949835‑M1/8‑1 (MQ=255)
        gttcccagtcccactgggcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAgg                                                           >  1:13099169‑M1/60‑68 (MQ=255)
        gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGG                                                           >  1:10003508‑M1/1‑68 (MQ=255)
        gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGG                                                           >  1:10696441‑M1/1‑68 (MQ=255)
        gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGG                                                           >  1:10491629‑M1/1‑68 (MQ=255)
          tcccagtcccacttgtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc                                                         >  1:19693354‑M1/58‑68 (MQ=255)
          tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc                                                         >  1:24787323‑M1/58‑68 (MQ=255)
          tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc                                                         >  1:18752555‑M1/58‑68 (MQ=255)
          ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGC                                                         <  1:5617159‑M1/68‑1 (MQ=255)
          ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGG                                                          <  1:7575037‑M1/67‑1 (MQ=255)
          ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGG                                                          <  1:21962058‑M1/67‑1 (MQ=255)
          gcttcattcactGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGG                                                           <  1:7276576‑M1/64‑1 (MQ=255)
             tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTg                                                       <  1:22660818/67‑1 (MQ=255)
             tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt                                                      <  1:31847934/68‑1 (MQ=255)
             tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt                                                      <  1:32124267/68‑1 (MQ=255)
             tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt                                                      <  1:3506021/68‑1 (MQ=255)
             tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt                                                      <  1:24451433/68‑1 (MQ=255)
             tcattcaCTGGCGAAGAGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTg                                                       <  1:22276837/67‑1 (MQ=255)
              cattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTa                                                     <  1:10309014/68‑1 (MQ=255)
                 tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac                                                  >  1:8080676/1‑68 (MQ=255)
                 tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac                                                  >  1:15224538/1‑68 (MQ=255)
                 tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac                                                  >  1:19074892/1‑68 (MQ=255)
                  caCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac                                                  >  1:18531231/1‑67 (MQ=255)
                    cTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGca                                               <  1:8328803/68‑1 (MQ=255)
                      ggCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGcaca                                             <  1:23843756/68‑1 (MQ=255)
                      ggCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGcaca                                             >  1:17617997/1‑68 (MQ=255)
                      ggCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGcaca                                             <  1:11994488/68‑1 (MQ=255)
                      ggCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGcaca                                             <  1:9685076/68‑1 (MQ=255)
                      ggCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGcaca                                             >  1:20383373/1‑68 (MQ=255)
                         gAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATg                                           <  1:19993526/67‑1 (MQ=255)
                         gAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATg                                           <  1:30744504/67‑1 (MQ=255)
                         gAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATg                                           <  1:6197691/67‑1 (MQ=255)
                             tGGAAACGTCAGACCTTAGGGCAACGCGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAag                                       <  1:23423658‑M2/67‑3 (MQ=255)
                             tGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAag                                       <  1:16043262‑M2/67‑3 (MQ=255)
                             tGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAag                                       <  1:28514182‑M2/67‑3 (MQ=255)
                              ggAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagcc                                     >  1:32405585‑M2/1‑64 (MQ=255)
                              ggAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagcc                                     >  1:15388339‑M2/1‑64 (MQ=255)
                              atagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGc                                      <  1:30420697‑M1/30‑1 (MQ=255)
                                aaaCGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagccc                                    >  1:33518747‑M2/1‑62 (MQ=255)
                                   ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGGTGTACCCGCACATGAACGCCCTTc                                 <  1:5836402‑M1/35‑1 (MQ=255)
                                   ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTc                                 <  1:168975‑M1/35‑1 (MQ=255)
                                   cGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagcccttc                                 <  1:25483850‑M2/67‑9 (MQ=255)
                                   cGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagcccttc                                 <  1:29820384‑M2/67‑9 (MQ=255)
                                   cGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagcccttc                                 <  1:34271006‑M2/67‑9 (MQ=255)
                                     tCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagcccttcgc                               <  1:27981649‑M2/67‑11 (MQ=255)
                                          ccTTAGGGCAACACGCCTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                          <  1:1564249/67‑1 (MQ=255)
                                          ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                          <  1:4052525/67‑1 (MQ=255)
                                          ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                          <  1:261113/67‑1 (MQ=255)
                                          ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                         >  1:26700415/1‑68 (MQ=255)
                                          ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                         >  1:18156068/1‑68 (MQ=255)
                                          ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                         <  1:12673401/68‑1 (MQ=255)
                                          ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCCCCCCGa                          <  1:29038719/67‑1 (MQ=255)
                                             tAGGGCAACACGACTTCAGCGCGGGCCAAGGGCTGTACACGCACATCAAagcccttcgcccgcgctga                      >  1:20783384‑M2/1‑49 (MQ=255)
                                                ggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGa                    >  1:25321158/1‑67 (MQ=255)
                                                 gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACCCGCACATGAAAGCCCTTCGCCCCGATGAAGccc                  >  1:29441917/1‑68 (MQ=255)
                                                 gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                  >  1:32967580/1‑68 (MQ=255)
                                                 gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                  >  1:12924810/1‑68 (MQ=255)
                                                 gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                  >  1:21325963/1‑68 (MQ=255)
                                                 gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                  >  1:23069245/1‑68 (MQ=255)
                                                 gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                  >  1:12331330/1‑68 (MQ=255)
                                                  cAACACGACTGCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                  <  1:1446177/67‑1 (MQ=255)
                                                   aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCg                 >  1:34039267/1‑67 (MQ=255)
                                                   aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCg                 >  1:34588360/1‑67 (MQ=255)
                                                   aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt                <  1:21645908/68‑1 (MQ=255)
                                                   aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt                <  1:14273051/68‑1 (MQ=255)
                                                    acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTc               <  1:25691304/68‑1 (MQ=255)
                                                     gacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCt              <  1:9422698‑M1/54‑1 (MQ=255)
                                                     gacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCt              <  1:15917157‑M1/54‑1 (MQ=255)
                                                      acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCtt             >  1:28779858/1‑68 (MQ=255)
                                                      acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCtt             >  1:11050003/1‑68 (MQ=255)
                                                         aCTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCATCCCCCCGATGAAGACAGTCTTtct          >  1:8647354/1‑68 (MQ=255)
                                                           ttCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTcc        <  1:3342106/68‑1 (MQ=255)
                                                            tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCg       >  1:6069119/1‑68 (MQ=255)
                                                              aGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGtt     >  1:6626816/1‑68 (MQ=255)
                                                              aGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGtt     >  1:11609483/1‑68 (MQ=255)
                                                              aGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGtt     >  1:24315524/1‑68 (MQ=255)
                                                               gcgcGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGtt     >  1:27779559/1‑67 (MQ=255)
                                                                cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc   >  1:31353664/1‑68 (MQ=255)
                                                                cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc   >  1:5224430/1‑68 (MQ=255)
                                                                cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc   >  1:23647404/1‑68 (MQ=255)
                                                                cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTAGACCCGATGAAGACCGTCTTTCTCCGTTGc   >  1:9110927/1‑68 (MQ=255)
                                                                   |                                                                 
AGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCA  >  CP009273/3920711‑3920843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.