| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4127796 | NA (NA) | 5 (0.010) | 4/98 | NT | NA | noncoding (80/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4127807 | NA (NA) | noncoding (91/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 608 total aligned reads displayed.
GAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAT > CP009273/4127731‑4127863 | aCGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAg < 1:12824859/67‑1 (MQ=40) aCGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGc < 1:30669443/68‑1 (MQ=40) aCGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGc < 1:14695222/68‑1 (MQ=40) aCGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGc < 1:12404024/68‑1 (MQ=40) cGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCg > 1:33621922/1‑68 (MQ=40) ccTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTa > 1:1500961/1‑68 (MQ=40) ttATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAgc < 1:4910120/68‑1 (MQ=40) aTCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAgcgc < 1:10444039/68‑1 (MQ=40) aTCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAgcgc < 1:7215125/68‑1 (MQ=40) tCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa < 1:8785848‑M2/68‑2 (MQ=255) ccGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAgcgct > 1:7593846/1‑66 (MQ=255) ccGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCat < 1:28347448‑M2/68‑3 (MQ=255) ccGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa < 1:9188346‑M2/67‑2 (MQ=255) cGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATgcgctacgcttatc > 1:32878921‑M1/1‑54 (MQ=255) cGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatc < 1:11314156‑M2/68‑4 (MQ=255) aaaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtt > 1:34701775/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:5807979/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:32514115/1‑68 (MQ=40) aGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:4042789/1‑67 (MQ=40) aGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:4449968/1‑67 (MQ=40) aGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:28748187/1‑67 (MQ=40) aGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:10015185/1‑67 (MQ=40) cACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCg > 1:27954321/1‑68 (MQ=255) aCGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGt < 1:28218152/68‑1 (MQ=255) gCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTc > 1:18217284/1‑68 (MQ=255) ttCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt < 1:31358209/68‑1 (MQ=255) ttCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt < 1:15445573/68‑1 (MQ=255) ttCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt < 1:3745062/68‑1 (MQ=255) tCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt > 1:29192711/1‑67 (MQ=255) tatatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:18563634/1‑68 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:8649623/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:22776124/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:23692292/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:132346/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:5085845/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:24565417/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:6573715/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGACTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:8195364/1‑67 (MQ=255) tatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGAc > 1:12261738/1‑68 (MQ=255) tatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGAc > 1:33200980/1‑68 (MQ=255) tatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAAATCCCGGAc > 1:23094543/1‑68 (MQ=255) tGCTGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:13465151/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:28644328/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:10826099/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:32284697/68‑1 (MQ=255) gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg > 1:25718297/1‑67 (MQ=255) gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg > 1:3022229/1‑67 (MQ=255) gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg > 1:14011688/1‑67 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:21331427/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:22149217/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:17638813/1‑68 (MQ=255) agaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCggg > 1:3942165/1‑68 (MQ=255) agaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCggg > 1:14319261/1‑68 (MQ=255) agaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCggg > 1:31821669/1‑68 (MQ=255) agaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCggg > 1:17001863/1‑68 (MQ=255) agaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCggg > 1:13805670/1‑68 (MQ=255) gaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGa > 1:6825254/1‑68 (MQ=255) ttGCGTAGGCCTGTTAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAg < 1:11667939/67‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGa < 1:20817688/66‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAg < 1:17352187/67‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt > 1:2892652/1‑68 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt < 1:8998199/68‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTgg < 1:23405381/68‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTgg < 1:15777077/68‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTgg < 1:10265449/68‑1 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa > 1:9736939/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa > 1:26612873/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa > 1:21840428/1‑68 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa < 1:29534473/67‑1 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa < 1:2714984/67‑1 (MQ=255) gCCTGATgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtag > 1:24892616‑M1/1‑7 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTa < 1:5495982/67‑1 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg > 1:11955344/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg > 1:19724271/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg > 1:19361133/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg > 1:629014/1‑68 (MQ=255) cTGATgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgagtgcttttgtagg > 1:24338821‑M1/1‑5 (MQ=255) cTGATAAGCGTAGCGCATCAGGCTATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg < 1:1610385/67‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAgg < 1:33403971/68‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAgg < 1:464228/68‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg < 1:27397338/67‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg < 1:29682376/67‑1 (MQ=255) gATgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccg < 1:2106924‑M1/68‑66 (MQ=255) gATgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccg > 1:24205789‑M1/1‑3 (MQ=255) gATgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccg < 1:25604765‑M1/68‑66 (MQ=255) gATgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccg < 1:18001196‑M1/68‑66 (MQ=255) gATgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccg < 1:33318517‑M1/68‑66 (MQ=255) tgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccgga < 1:30950630‑M1/68‑68 (MQ=255) tgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccgga < 1:31050080‑M1/68‑68 (MQ=255) tgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccgg < 1:23941973‑M1/67‑67 (MQ=255) tgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccgg < 1:4284900‑M1/67‑67 (MQ=255) tgcgctacgcttatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccgg < 1:16540739‑M1/67‑67 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTa < 1:34305441/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:22585867/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:20422981/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:19083504/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:8448133/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:16281424/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:26313708/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:11149936/1‑68 (MQ=255) | GAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAT > CP009273/4127731‑4127863 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |