| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4552439 | 419 (1.000) | 3 (0.010) | 3/96 | NT | 0.92% | coding (54/1179 nt) | yjiJ | DUF1228 family putative inner membrane MFS superfamily transporter |
| ? | CP009273 | = 4552470 | 288 (0.810) | coding (23/1179 nt) | yjiJ | DUF1228 family putative inner membrane MFS superfamily transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 452 total aligned reads displayed.
CCTAAACCCATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAACAA > CP009273/4552404‑4552537 | ccTAAACCCATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTa < 1:12844339/67‑1 (MQ=255)ccTAAACCCATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAc < 1:21147213‑M2/68‑2 (MQ=255) cTAAACCCATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAc > 1:31871190‑M2/1‑66 (MQ=255) aaaCCCATACCTAAGGTCAGAACCAGCATCACGAAAAGCGCTGTGCTGAAAGAAAAGCGTTCTAcggg > 1:28705427‑M2/1‑64 (MQ=255) cccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggatg > 1:28398228‑M2/1‑61 (MQ=255) cccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggat < 1:24603177‑M2/67‑7 (MQ=255) cccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggat < 1:20651167‑M2/67‑7 (MQ=255) cccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggat < 1:1736932‑M2/67‑7 (MQ=255) cccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggat < 1:4322985‑M2/67‑7 (MQ=255) cccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggat < 1:390463‑M2/67‑7 (MQ=255) cccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggat < 1:6613015‑M2/67‑7 (MQ=255) cccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggat < 1:14077456‑M2/67‑7 (MQ=255) cccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggat < 1:13477301‑M2/67‑7 (MQ=255) cccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggat < 1:32268959‑M2/67‑7 (MQ=255) cccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggat < 1:29683888‑M2/67‑7 (MQ=255) cccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggat < 1:2909759‑M2/67‑7 (MQ=255) cccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggat < 1:27918235‑M2/67‑7 (MQ=255) cccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggat < 1:27700714‑M2/67‑7 (MQ=255) ccATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggatgc > 1:19261487‑M2/1‑60 (MQ=255) aCCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTgg > 1:4486594/1‑68 (MQ=255) ccTAAGGTCTGTACCAGCATCCCCAAAAGTGCGGTGCTGAAAGAAAAGGGTTCTAGGGGATGCGTGGa < 1:22821513/68‑1 (MQ=255) ccTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTgg > 1:23494458/1‑67 (MQ=255) ccTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGa < 1:17003632/68‑1 (MQ=255) ccTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGa < 1:31029588/68‑1 (MQ=255) cTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGAc > 1:24115875/1‑68 (MQ=255) cTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGAc > 1:33482565/1‑68 (MQ=255) cTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGAc > 1:19530960/1‑68 (MQ=255) cTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCCATCTACGGGATGCGTGGAc > 1:26080217/1‑68 (MQ=255) ggTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAg > 1:4565098/1‑68 (MQ=255) ggTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAg > 1:19988719/1‑68 (MQ=255) ggTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAg > 1:15894801/1‑68 (MQ=255) gTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAg > 1:17974218/1‑67 (MQ=255) gTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAg > 1:15771827/1‑67 (MQ=255) gTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAg > 1:25700548/1‑67 (MQ=255) tCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGTAGGc > 1:23808884/1‑68 (MQ=255) tCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAgg < 1:11130831/67‑1 (MQ=255) tCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGc > 1:11980046/1‑68 (MQ=255) tCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGc > 1:32579349/1‑68 (MQ=255) tCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGc > 1:21809581/1‑68 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTAcgggatgctggttctgaccttaggt > 1:8157246‑M2/1‑43 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCAt < 1:5631364/65‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCAt < 1:7542973/65‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATg < 1:1450866/66‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATg < 1:8519227/66‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATg < 1:30361783/66‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATg < 1:26817482/66‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATg < 1:14863402/66‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATg < 1:16611816/66‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATg < 1:10954416/66‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATg < 1:10046476/66‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGtt > 1:29566382/1‑68 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGtt > 1:2894971/1‑68 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGt < 1:3442577/67‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGt < 1:5975544/67‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGt < 1:13676911/67‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGt < 1:3134969/67‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGt < 1:18185277/67‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGt < 1:8947163/67‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGt < 1:9192134/67‑1 (MQ=255) aCCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAACCGTTCTACGGGATGCGTGGACGAAGGCATg < 1:5539735/66‑1 (MQ=255) ccAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGttt > 1:12228989/1‑68 (MQ=255) ccAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGttt > 1:12372196/1‑68 (MQ=255) ccAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGttt > 1:26303244/1‑68 (MQ=255) ccAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGttt > 1:17526522/1‑68 (MQ=255) cATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTaa > 1:27380581/1‑66 (MQ=255) cATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTaa > 1:26700963/1‑66 (MQ=255) cccGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCttg > 1:4899037/1‑68 (MQ=255) aGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCa > 1:10548490/1‑68 (MQ=255) aGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCa > 1:13308870/1‑68 (MQ=255) aGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACATTGTTTGTCa > 1:11324818/1‑68 (MQ=255) gCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTttgt < 1:3417865/67‑1 (MQ=255) tGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTtgttgt < 1:3532568/68‑1 (MQ=255) tGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTtgttgt < 1:14811148/68‑1 (MQ=255) aaagaaaAGCGTTCTACGGGATGCGTGGTCGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTa < 1:6052441/68‑1 (MQ=255) aagaaaAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTaa > 1:18394606/1‑68 (MQ=255) aagaaaAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTa > 1:872936/1‑67 (MQ=255) aagaaaAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTa > 1:7757407/1‑67 (MQ=255) aagaaaAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTa < 1:6934054/67‑1 (MQ=255) aagaaaAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTa > 1:15007429/1‑67 (MQ=255) aagaaaAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTa < 1:15253012/67‑1 (MQ=255) aagaaaAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTa < 1:5871668/67‑1 (MQ=255) gaaaAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACa > 1:30624714/1‑68 (MQ=255) gaaaAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACa > 1:14167559/1‑68 (MQ=255) gaaaAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACa > 1:5747947/1‑68 (MQ=255) aaaGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACa < 1:20175077/66‑1 (MQ=255) aaaGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACa < 1:27180449/66‑1 (MQ=255) aaaGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAg < 1:2149702/68‑1 (MQ=255) aaGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGt < 1:23135759/68‑1 (MQ=255) aaGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGt < 1:2521460/68‑1 (MQ=255) aaGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGt < 1:338960/68‑1 (MQ=255) aaGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGt < 1:33196913/68‑1 (MQ=255) aaGCGTTATACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGt < 1:16247695/68‑1 (MQ=255) gCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTta > 1:5346518/1‑68 (MQ=255) gCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTta > 1:18731213/1‑68 (MQ=255) cGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGATGTTAACAAGTtaa > 1:3089712/1‑68 (MQ=255) tCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTtaata < 1:6282257/67‑1 (MQ=255) cTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAAc < 1:22378897/68‑1 (MQ=255) cTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAAc < 1:1254992/68‑1 (MQ=255) cTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAAc < 1:9547392/68‑1 (MQ=255) tACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAACa < 1:7153059/68‑1 (MQ=255) | CCTAAACCCATACCTAAGGTCAGAACCAGCATCCCGAAAAGCGCGGTGCTGAAAGAAAAGCGTTCTACGGGATGCGTGGACGAAGGCATGTTTAACCTTGTTTGTCATTTTTGTTGTTAACAAGTTAATAACAA > CP009273/4552404‑4552537 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |