New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 4598786 =328 (0.790)3 (0.010) 3/88 NT 1.2% coding (324/678 nt) yjjG dUMP phosphatase
?CP009273 4598911 = 228 (0.700)coding (449/678 nt) yjjG dUMP phosphatase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 353 total aligned reads displayed.

CTGGAACGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCACGCGTGCT  >  CP009273/4598844‑4598977
                                                                   |                                                                  
cTGGAACGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCaa                                                                    >  1:5608993/1‑68 (MQ=255)
cTGGAACGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCaa                                                                    >  1:7944783/1‑68 (MQ=255)
cTGGAACGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCaa                                                                    >  1:28162126/1‑68 (MQ=255)
 tGGAACGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTACCGAAGAAGTTGGCGTTGCCaa                                                                    >  1:25817310/1‑67 (MQ=255)
    aaCGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCg                                                                >  1:21479476/1‑68 (MQ=255)
    aaCGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCg                                                                >  1:25570692/1‑68 (MQ=255)
    aaCGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCg                                                                >  1:13940781/1‑68 (MQ=255)
    aaCGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCg                                                                >  1:30825169/1‑68 (MQ=255)
    aaCGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCg                                                                >  1:12243986/1‑68 (MQ=255)
    aaCGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCg                                                                >  1:30453321/1‑68 (MQ=255)
     aCGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGa                                                               <  1:12856381/68‑1 (MQ=255)
     aCGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGa                                                               >  1:18415596/1‑68 (MQ=255)
     aCGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGa                                                               >  1:30248349/1‑68 (MQ=255)
      cGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGaa                                                              >  1:6572003/1‑68 (MQ=255)
         aCGGGCCTGCGTGATTTCTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAATCCGAATaa                                                           >  1:11152880/1‑68 (MQ=255)
         aCGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATaa                                                           >  1:20093710/1‑68 (MQ=255)
         aCGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATaa                                                           >  1:9636299/1‑68 (MQ=255)
         aCGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATa                                                            <  1:23662903/67‑1 (MQ=255)
           gggCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGa                                                         <  1:9083899/68‑1 (MQ=255)
            ggCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGaa                                                        >  1:29308376/1‑68 (MQ=255)
              ccTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGaaaa                                                      >  1:1197934/1‑68 (MQ=255)
              ccTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGaaaa                                                      >  1:22100524/1‑68 (MQ=255)
              ccTGCGTGATTACTTCGATTTGCTGGTGATTTCAGAAGAAGTTGGCGTTGCCAAACCGAATAAGaaaa                                                      >  1:19277760/1‑68 (MQ=255)
               cTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAAt                                                     <  1:32294693/68‑1 (MQ=255)
               cTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAAt                                                     <  1:5293769/68‑1 (MQ=255)
               cTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAAt                                                     <  1:5005488/68‑1 (MQ=255)
                 gCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAAttt                                                   >  1:31001949/1‑68 (MQ=255)
                  cGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAAttt                                                   >  1:16909101/1‑67 (MQ=255)
                  cGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAAttt                                                   >  1:7061920/1‑67 (MQ=255)
                   gTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTc                                                 >  1:31782882/1‑68 (MQ=255)
                   gTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTc                                                 >  1:34331477/1‑68 (MQ=255)
                   gTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTc                                                 >  1:3016686/1‑68 (MQ=255)
                   gTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTc                                                 >  1:29736116/1‑68 (MQ=255)
                   gTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTc                                                 >  1:19875017/1‑68 (MQ=255)
                   gTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTc                                                 >  1:11832965/1‑68 (MQ=255)
                   gTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTc                                                 >  1:8885579/1‑68 (MQ=255)
                   gTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTc                                                 >  1:14673744/1‑68 (MQ=255)
                   gTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTc                                                 >  1:1511341/1‑68 (MQ=255)
                   gTGATTACTTCGATTTGCTGGTGATTTCCGAAGAACTTGTCGTTGCCAAACCGAATAAGAAAATTTTc                                                 >  1:10937285/1‑68 (MQ=255)
                       ttACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGAtt                                             >  1:247376/1‑68 (MQ=255)
                        tACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTa                                            >  1:4516386/1‑68 (MQ=255)
                        tACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTa                                            >  1:28372411/1‑68 (MQ=255)
                        tACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTa                                            >  1:21747800/1‑68 (MQ=255)
                        tACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTa                                            >  1:26968384/1‑68 (MQ=255)
                        tACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTa                                            >  1:10044390/1‑68 (MQ=255)
                         aCTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTAt                                           <  1:15893946/68‑1 (MQ=255)
                           ttCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATgc                                         >  1:18773847/1‑68 (MQ=255)
                           ttCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATgc                                         <  1:17677489/68‑1 (MQ=255)
                            tctaTTTGCTTGTGATTTCCGTAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATgcg                                        <  1:27609136/65‑1 (MQ=255)
                            tCGTTTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATgcg                                        <  1:21982089/68‑1 (MQ=255)
                            tCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTTCCAAACCGAATAAGAAAATTTTCGATTATgcg                                        <  1:21200656/68‑1 (MQ=255)
                            tCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATgcg                                        <  1:32689109/68‑1 (MQ=255)
                            tCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATgcg                                        <  1:16703167/68‑1 (MQ=255)
                            tCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATgcg                                        <  1:11259219/68‑1 (MQ=255)
                            tCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATgcg                                        <  1:13808535/68‑1 (MQ=255)
                            tCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATgcg                                        <  1:29590755/68‑1 (MQ=255)
                               aTTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTg                                     >  1:27836797/1‑68 (MQ=255)
                               aTTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTg                                     >  1:11456237/1‑68 (MQ=255)
                                tttGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTgg                                    <  1:33811275/68‑1 (MQ=255)
                                tttGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTgg                                    >  1:26534196/1‑68 (MQ=255)
                                tttGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTg                                     <  1:1791151/67‑1 (MQ=255)
                                 ttGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGa                                   <  1:23353765/68‑1 (MQ=255)
                                      ggTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAgg                              <  1:3544638/68‑1 (MQ=255)
                                      ggTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAgg                              <  1:28732746/68‑1 (MQ=255)
                                        tGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCg                            >  1:33383892/1‑68 (MQ=255)
                                         gATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCgg                           <  1:10366883/68‑1 (MQ=255)
                                         gATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCgg                           <  1:27524852/68‑1 (MQ=255)
                                         gATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCgg                           <  1:13203801/68‑1 (MQ=255)
                                         gATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCgg                           <  1:18888084/68‑1 (MQ=255)
                                          aTTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCgg                           >  1:24229543/1‑67 (MQ=255)
                                              ccGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAAt                      <  1:4016602/68‑1 (MQ=255)
                                              ccGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAAt                      <  1:7247336/68‑1 (MQ=255)
                                              ccGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAAt                      <  1:32727071/68‑1 (MQ=255)
                                              ccGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAAt                      <  1:27191381/68‑1 (MQ=255)
                                              ccGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAAt                      <  1:2675176/68‑1 (MQ=255)
                                               cGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATc                     <  1:25963620/68‑1 (MQ=255)
                                                  agaagTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTg                  >  1:34759131/1‑68 (MQ=255)
                                                     agTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGAcc               <  1:25362059/68‑1 (MQ=255)
                                                     agTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGAcc               >  1:13046471/1‑68 (MQ=255)
                                                     agTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGAcc               >  1:7816111/1‑68 (MQ=255)
                                                     agTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGAcc               <  1:3248989/68‑1 (MQ=255)
                                                     agTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGAcc               <  1:21381776/68‑1 (MQ=255)
                                                        tggcgttgccaAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGt             <  1:26205432‑M2/56‑1 (MQ=255)
                                                        tggcgttgccaAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGt             <  1:24140775‑M2/56‑1 (MQ=255)
                                                        tggcgttgccaAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGt             <  1:29134624‑M2/56‑1 (MQ=255)
                                                           ggttgccaAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCAc         >  1:20734146‑M2/9‑68 (MQ=255)
                                                           cgttgccaAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCa          <  1:31410908‑M2/59‑1 (MQ=255)
                                                           cgttgccaAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCAc         >  1:15440563‑M2/9‑68 (MQ=255)
                                                           cgttgccaAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCAc         >  1:10656855‑M2/9‑68 (MQ=255)
                                                               gccaAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCACGCGt     <  1:3670617‑M2/64‑1 (MQ=255)
                                                               gccaAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCACGCGt     <  1:22957905‑M2/64‑1 (MQ=255)
                                                                ccaAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCACGCGt     >  1:17569415‑M2/4‑67 (MQ=255)
                                                                 caAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCACGCGTg    <  1:22540836‑M2/65‑1 (MQ=255)
                                                                 caAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCACGCGTg    <  1:7481954‑M2/65‑1 (MQ=255)
                                                                 caAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCACGCGTg    <  1:14235656‑M2/65‑1 (MQ=255)
                                                                 caAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCACGCGTg    <  1:8761993‑M2/65‑1 (MQ=255)
                                                                 caAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCACGCGTg    <  1:33271362‑M2/65‑1 (MQ=255)
                                                                  aAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCACGCGTGCt  <  1:6961300‑M2/67‑1 (MQ=255)
                                                                  aAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCACGCGTGCt  <  1:8363428‑M2/67‑1 (MQ=255)
                                                                  aAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCACGCGTGCt  <  1:23839229‑M2/67‑1 (MQ=255)
                                                                   |                                                                  
CTGGAACGCACGGGCCTGCGTGATTACTTCGATTTGCTGGTGATTTCCGAAGAAGTTGGCGTTGCCAAACCGAATAAGAAAATTTTCGATTATGCGCTGGAACAGGCGGGCAATCCTGACCGTTCACGCGTGCT  >  CP009273/4598844‑4598977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.