New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1871532308 (0.740)15 (0.040) 6/96 NT 5.8% intergenic (+19/+3) yeaO/yoaF DUF488 family protein/DUF333 family outer membrane lipoprotein
?CP009273 = 1871547 219 (0.610)coding (243/255 nt) yoaF DUF333 family outer membrane lipoprotein

Only 100 of 342 total aligned reads displayed.

GCTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATT  >  CP009273/1871480‑1871612
                                                                   |                                                                 
gcTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCa                                                                   >  1:32752507/1‑68 (MQ=255)
  tGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgc                                                                 >  1:3908455‑M2/1‑66 (MQ=255)
  tGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgc                                                                 >  1:1216093‑M2/1‑66 (MQ=255)
   ggTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgcc                                                                >  1:5258889‑M2/1‑65 (MQ=255)
   ggTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgcc                                                                >  1:11904662‑M2/1‑65 (MQ=255)
     tGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgg                                                              <  1:8977456‑M2/68‑6 (MQ=255)
     tGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgg                                                              <  1:29585638‑M2/68‑6 (MQ=255)
      gCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgga                                                             <  1:24303448‑M2/68‑7 (MQ=255)
      gCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgga                                                             >  1:33631250‑M2/1‑62 (MQ=255)
      gCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgga                                                             <  1:32598733‑M2/68‑7 (MQ=255)
      gCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccgg                                                              >  1:30281084‑M2/1‑62 (MQ=255)
         ggCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATgg                                                          <  1:17303734/68‑1 (MQ=255)
         ggCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATgg                                                          <  1:1464963/68‑1 (MQ=255)
         ggCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATgg                                                          <  1:10096790/68‑1 (MQ=255)
          gCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATgg                                                          >  1:29237172/1‑67 (MQ=255)
          gCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATgg                                                          >  1:10521203/1‑67 (MQ=255)
          gCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATgg                                                          >  1:25601362/1‑67 (MQ=255)
          gCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATgg                                                          >  1:21118160/1‑67 (MQ=255)
           ccGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTc                                                        >  1:23621125/1‑68 (MQ=255)
           ccGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTc                                                        >  1:14515727/1‑68 (MQ=255)
            cGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgt                                                       >  1:5575011‑M2/1‑56 (MQ=255)
            cGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgt                                                       >  1:8096832‑M2/1‑56 (MQ=255)
            cGACTGGCTACGTAGCTTGGGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgt                                                       >  1:16600203‑M2/1‑56 (MQ=255)
              aCTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAc                                                      >  1:28696577/1‑67 (MQ=255)
               cTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcg                                                     <  1:26841155/67‑1 (MQ=255)
                tGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcgcc                                                   <  1:13856549/68‑1 (MQ=255)
                tGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCAcgcc                                                   <  1:18522277/68‑1 (MQ=255)
                tGGCTACGTAGCTTGTGATTTTAGTACAGCAACCGGCGGTTATTTTTCACCAGCCGGATGGTCAcgcc                                                   <  1:23193718/68‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACgccgcc                                                <  1:18672684/67‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACgccgcc                                                <  1:32068023/67‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACgccgcc                                                >  1:29820937/1‑67 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACgccgcc                                                <  1:33342753/67‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACgccgcc                                                <  1:15068953/67‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACgccgcc                                                <  1:7624863/67‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCca                                               <  1:33569679/68‑1 (MQ=255)
                    tACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCca                                               <  1:28081813/68‑1 (MQ=255)
                        tAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGTTCACGCCGCCACAAt                                           >  1:33852116/1‑68 (MQ=255)
                        tAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:15650998/1‑68 (MQ=255)
                        tAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:25179901/1‑68 (MQ=255)
                        tAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:31457471/1‑68 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatcacaa                                          >  1:2497037‑M2/1‑43 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:5996162/1‑67 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           <  1:25400068/67‑1 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           <  1:16409588/67‑1 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:21744822/1‑67 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:20193295/1‑67 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATg                                          <  1:2134441/68‑1 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTAACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:34388492/1‑67 (MQ=255)
                         aGCTTGTGATTTTAGTACAGCATCCGGCGGTAATTTTTCACCAGCCGGATGGTCACGCCGCCACAAt                                           >  1:20349532/1‑67 (MQ=255)
                          gCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATg                                          >  1:31593762/1‑67 (MQ=255)
                          gCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATg                                          >  1:7131316/1‑67 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatcacaagct                                       >  1:26485402‑M2/1‑40 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAgccggatgctgtactaaaatcacaagct                                       >  1:20890135‑M2/1‑40 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGccc                                       >  1:24052719/1‑68 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGcc                                        <  1:17641368/67‑1 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGc                                         <  1:18181152/66‑1 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGc                                         <  1:4070158/66‑1 (MQ=255)
                            ttGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACAAGCCGGATGGTCACGCCGCCACAATGc                                         <  1:15980952/66‑1 (MQ=255)
                              gtgATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAt                                     <  1:26070823/68‑1 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:4921708/67‑1 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:8536112/67‑1 (MQ=255)
                                gATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:29066863/67‑1 (MQ=255)
                                gATTTTAGTACAGCAACCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCAtt                                    <  1:34609541/67‑1 (MQ=255)
                                 aTTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  >  1:14097371/1‑68 (MQ=255)
                                 aTTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  >  1:30851184/1‑68 (MQ=255)
                                 aTTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  >  1:10660362/1‑68 (MQ=255)
                                 aTTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  >  1:13060979/1‑68 (MQ=255)
                                  ttttAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  <  1:7251807/67‑1 (MQ=255)
                                  ttttAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATtca                                  <  1:29688446/67‑1 (MQ=255)
                                     tAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCaa                              >  1:19001403/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:7901799/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:24512417/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:24810591/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:33056508/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:22354753/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:19336867/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:26322903/1‑68 (MQ=255)
                                         aCAGCATCCGGCGGTTATTCTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGt                          >  1:30370442/1‑68 (MQ=255)
                                           aGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGtt                         >  1:4385552/1‑67 (MQ=255)
                                           aGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGtt                         >  1:16148982/1‑67 (MQ=255)
                                           aGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGtt                         >  1:6412105/1‑67 (MQ=255)
                                              aTCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGtt                         <  1:22887876/64‑1 (MQ=255)
                                              aTCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCa                      >  1:7039918/1‑67 (MQ=255)
                                                 cggcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGc                  <  1:6606373/68‑1 (MQ=255)
                                                 cggcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGc                  <  1:15366842/68‑1 (MQ=255)
                                                   gcggTTATTTTTCACCAGCCGGATGGTCCCGCCGCCACAATGCCCATTCATCAATCGTTTCACCGccc                >  1:5186085/1‑68 (MQ=255)
                                                   gcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGccc                >  1:10204702/1‑68 (MQ=255)
                                                   gcggTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGccc                >  1:13560760/1‑68 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:23278518/67‑1 (MQ=255)
                                                       ttATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGt             <  1:21913193/67‑1 (MQ=255)
                                                        tATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTa            <  1:20689863/67‑1 (MQ=255)
                                                            tttCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTg       <  1:27313676/68‑1 (MQ=255)
                                                              tCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCa     <  1:2700927/68‑1 (MQ=255)
                                                                aCCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAAt   >  1:1808878/1‑68 (MQ=255)
                                                                aCCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAAt   <  1:10831366/68‑1 (MQ=255)
                                                                aCCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAAt   >  1:9510733/1‑68 (MQ=255)
                                                                 ccAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCGCGGTAATTTGCAAtt  >  1:11122445/1‑68 (MQ=255)
                                                                 ccAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAAtt  >  1:17050894/1‑68 (MQ=255)
                                                                 ccAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAAtt  >  1:12787653/1‑68 (MQ=255)
                                                                 ccAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAAtt  >  1:9124150/1‑68 (MQ=255)
                                                                   |                                                                 
GCTGGTGCTGGCCGACTGGCTACGTAGCTTGTGATTTTAGTACAGCATCCGGCGGTTATTTTTCACCAGCCGGATGGTCACGCCGCCACAATGCCCATTCATCAATCGTTTCACCGCCCGGTAATTTGCAATT  >  CP009273/1871480‑1871612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.