| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3031308 = | 477 (1.140) | 24 (0.070) | 12/98 | NT | 6.5% | coding (158/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | CP009273 | 3031324 = | 275 (0.750) | coding (142/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
Only 100 of 597 total aligned reads displayed.
GCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATAAACGGCGCAGC > CP009273/3031259‑3031391 | gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:20736724/68‑1 (MQ=255)gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:16458378/68‑1 (MQ=255)gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:15556443/68‑1 (MQ=255)gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:25316492/68‑1 (MQ=255) taaaaGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:3189442/67‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAcc < 1:26988540/67‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAcc < 1:12654808/67‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:13448149/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:17612443/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:18217835/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:23240736/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:25430617/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:29761228/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:30907026/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:34183748/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt > 1:4256592/1‑68 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:536610/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:5792188/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:10865724/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:6085446/68‑1 (MQ=255) ccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctgccctggcagcaTAc > 1:25104029‑M2/64‑66 (MQ=255) cggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCAGGGCAGCATACCt > 1:13673283‑M1/47‑67 (MQ=255) aaaGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCttt < 1:33626093/68‑1 (MQ=255) aaaGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCttt < 1:11879569/68‑1 (MQ=255) gTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGc < 1:6394534/68‑1 (MQ=255) cgcagtgcgcaagacctgcaacgccgggttaaaggtaTGCTGCCAGGGCAGCATACCTTTAACACTGc > 1:10383603‑M1/38‑68 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAaca > 1:5109690/1‑62 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCg < 1:34819190/67‑1 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt < 1:8446176/68‑1 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt < 1:33133567/68‑1 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt < 1:4676164/68‑1 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt < 1:24509940/68‑1 (MQ=255) aaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGtt < 1:178755/68‑1 (MQ=255) aaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGtt < 1:31114366/68‑1 (MQ=255) ggATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTcc > 1:22440014/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:9280987/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:27489643/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:32302581/1‑68 (MQ=255) tctcAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGt < 1:24212345/68‑1 (MQ=255) ctcAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGtt < 1:2349432/68‑1 (MQ=255) ctcAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGtt < 1:28376181/68‑1 (MQ=255) ctcAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTAAACACTGCGTTCCAGtt < 1:8701692/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:10535564/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:6630283/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:3698870/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:28566694/68‑1 (MQ=255) aaCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:1001748/1‑68 (MQ=255) aaCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:19196335/1‑68 (MQ=255) aCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:14647610/1‑67 (MQ=255) aCGGACTTTTCGACGCCGCTCAGTTGCTGCCATGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:6898586/1‑67 (MQ=255) gCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTgcgc > 1:23952434/1‑68 (MQ=255) cTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCAc < 1:12867416/68‑1 (MQ=255) cTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCAc < 1:18799449/68‑1 (MQ=255) ttttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACt < 1:892040/68‑1 (MQ=255) ttttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACt < 1:30366735/68‑1 (MQ=255) aacgcagtgttaaaggtatgctgccctggcagcaTACCTTTAACACTGCGTTCCAGTTCTTgcgc > 1:16296071‑M2/35‑65 (MQ=255) tttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:32615221/68‑1 (MQ=255) tttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:14161439/68‑1 (MQ=255) tttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:21259575/68‑1 (MQ=255) ttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:21833069/68‑1 (MQ=255) tCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCg < 1:29520417/68‑1 (MQ=255) cGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGt > 1:8176471/1‑68 (MQ=255) cGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGt > 1:29248675/1‑68 (MQ=255) cGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGt > 1:24856993/1‑68 (MQ=255) cgccgcTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt < 1:9444721/68‑1 (MQ=255) cgccgcTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt < 1:34479286/68‑1 (MQ=255) gttaaaggtatgctgccctggcagcaTACCTTTAACACTGCGTTCCAGGTCTTGCGCACTGCGTACt > 1:17198269‑M2/27‑67 (MQ=255) gccgcTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:1380406/1‑67 (MQ=255) gccgcTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:16691267/1‑67 (MQ=255) gccgcTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:22881606/1‑67 (MQ=255) aggtatgctgccctggcagcaTACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCg > 1:11997612‑M2/22‑67 (MQ=255) gtatgctgccctggcagcaTACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCg > 1:19494782‑M2/20‑65 (MQ=255) gtatgctgccctggcagcaTACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCg > 1:3848218‑M2/20‑65 (MQ=255) gTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTg > 1:32783304/1‑68 (MQ=255) gTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTAGCGCACTGCGTACTCCCCGGCTg > 1:26398446/1‑68 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTgg > 1:28968072‑M1/1‑67 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc < 1:29951919‑M1/68‑1 (MQ=255) gctgccctggcagcaTACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:18454747‑M2/16‑68 (MQ=255) GCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:25855082‑M1/1‑68 (MQ=255) GCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:19800793‑M1/1‑68 (MQ=255) GCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:20497972‑M1/1‑68 (MQ=255) GCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:27747615‑M1/1‑68 (MQ=255) GCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:11162092‑M1/1‑68 (MQ=255) GCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:11494446‑M1/1‑68 (MQ=255) GCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:12400415‑M1/1‑68 (MQ=255) GCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:976825‑M1/1‑68 (MQ=255) GCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCg > 1:14378770‑M1/1‑68 (MQ=255) tgccctggcagcaTACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGta > 1:27997540‑M2/14‑68 (MQ=255) TGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGta > 1:26585725‑M1/1‑68 (MQ=255) TGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGta > 1:25983617‑M1/1‑68 (MQ=255) CCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGtata < 1:11061872‑M1/68‑1 (MQ=255) CCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGtata < 1:22000925‑M1/68‑1 (MQ=255) CCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGtata < 1:9023259‑M1/68‑1 (MQ=255) CCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGtata < 1:725754‑M1/68‑1 (MQ=255) CCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGtata < 1:18881263‑M1/68‑1 (MQ=255) CAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATaa < 1:11606004‑M1/68‑1 (MQ=255) CAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATaa > 1:31614061‑M1/1‑68 (MQ=255) cagcaTACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATAAGCGgc > 1:21538033‑M2/6‑68 (MQ=255) agcaTACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATAAACGgc < 1:14925036‑M2/63‑1 (MQ=255) aTACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATAAACGgcg < 1:16898376‑M2/64‑1 (MQ=255) | GCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGCGTATAAACGGCGCAGC > CP009273/3031259‑3031391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |