| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3701734 = | NA (NA) | 8 (0.020) | 5/96 | NT | 6.1% | intergenic (‑669/+242) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701742 = | 143 (0.340) | intergenic (‑677/+234) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 406 total aligned reads displayed.
CACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTG > CP009273/3701675‑3701809 | aaagcctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagg < 1:29165504‑M2/1‑1 (MQ=255)aaagcctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagg < 1:20765427‑M2/1‑1 (MQ=255)aaagcctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagg < 1:5560652‑M2/1‑1 (MQ=255)aaagcctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagg > 1:5873055‑M2/68‑68 (MQ=255) acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGCACCTCCCTGCCCCCgg > 1:13323835/1‑68 (MQ=255) acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCgg > 1:3666301/1‑68 (MQ=255) acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCgg > 1:19669268/1‑68 (MQ=255) acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCg < 1:5497505/67‑1 (MQ=255) acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCg < 1:15954649/67‑1 (MQ=255) agcctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGa > 1:28659773‑M2/66‑68 (MQ=255) agcctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGa > 1:6527564‑M2/66‑68 (MQ=255) agcctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGa < 1:19013462‑M2/3‑1 (MQ=255) tttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAgg < 1:24062227/68‑1 (MQ=255) tttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAgg < 1:26529259/68‑1 (MQ=255) cctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg < 1:22868176‑M2/5‑1 (MQ=255) cctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg > 1:25330574‑M2/64‑68 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:22237797/68‑1 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:19271448/68‑1 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:16904054/68‑1 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:8682394/68‑1 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:22029781/68‑1 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:16302712/68‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgcgaacctccgggggcagGGAg < 1:27807458‑M2/4‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg < 1:29490642‑M2/5‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAgg < 1:30854236‑M2/5‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGt < 1:11884922‑M2/6‑1 (MQ=255) ctgctcaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGt > 1:33474446‑M2/63‑68 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGtt < 1:24823825/68‑1 (MQ=255) cTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGTCGAGTCGACCCTCCCTGCCCCCGGAGGTtctg > 1:6591429/1‑67 (MQ=25) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtctc > 1:16553800/1‑68 (MQ=255) gATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt < 1:14839036/68‑1 (MQ=255) gagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGTTCTCATCCt < 1:21685195‑M2/15‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCt < 1:444175/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCt < 1:2344700/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCt < 1:11535676/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCt < 1:15767633/68‑1 (MQ=255) gCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTGTCATCCTCAGGa > 1:11442225/1‑68 (MQ=255) gCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGa < 1:14592880/68‑1 (MQ=255) gACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCt < 1:22740218/68‑1 (MQ=255) gACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCt < 1:937783/68‑1 (MQ=255) gACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCt < 1:10713792/68‑1 (MQ=255) cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGc > 1:24317658/1‑68 (MQ=255) cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGc > 1:30700752/1‑68 (MQ=255) cgcgTCTTATCAGGCCTACGACGAGTCGACCCTCCATGCCCCCGGAGGTAGTCACCCACATGAGCt > 1:5121397/1‑66 (MQ=18) cTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAt < 1:7975228/67‑1 (MQ=255) cTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAt < 1:17221256/67‑1 (MQ=255) cTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAt > 1:33773394/1‑67 (MQ=255) ttATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGc < 1:28031589/68‑1 (MQ=255) tctgcagcgcaggaggatgagaacctccgggggcagGGAGGTTCTCATCCTCATGAGCTGCAGATGCa < 1:26881019‑M2/32‑1 (MQ=255) aTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaa < 1:33576710/68‑1 (MQ=255) aTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaa < 1:18678285/68‑1 (MQ=255) aTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaa < 1:24469581/68‑1 (MQ=255) aTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaa < 1:14224853/68‑1 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:17297906‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:11616983‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:6297702‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:26361473‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:20044978‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:3329166‑M1/1‑68 (MQ=255) aGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAA > 1:24191528‑M1/1‑68 (MQ=255) ggCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAA > 1:31356354‑M1/1‑68 (MQ=255) gCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAA > 1:20474239‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGC > 1:11036089‑M1/1‑68 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:1679933‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:28169565‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:2602361‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:34079265‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:31805170‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:12427370‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:13795892‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:12940197‑M1/1‑67 (MQ=255) ccTACGTAGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:15159348‑M1/1‑67 (MQ=255) cGTCGAGTCGAACCTCCCTGCCCCCGGCGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC < 1:10293484‑M1/68‑1 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCT < 1:5970776‑M1/68‑1 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:34374032‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:10164858‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:12720059‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:12233567‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:7185412‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:7661232‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:21484799‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:32597622‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:21089598‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:30119414‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:2378046‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:17930770‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:17143724‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:26766095‑M1/1‑67 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:349812‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > 1:32762714‑M1/1‑68 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:34168899‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:27132854‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCT < 1:28825094‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:21262441‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:7477193‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:28462815‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:15518045‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:32098147‑M1/67‑1 (MQ=255) cTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCaacgagcaggc < 1:8235900‑M1/68‑12 (MQ=255) gcagGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGaa > 1:32001635‑M2/5‑68 (MQ=255) | CACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTG > CP009273/3701675‑3701809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |