Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 246569 247223 655 134 [127] [130] 134 lafU pseudogene, lateral flagellar motor protein fragment

Only 100 of 134 total aligned reads displayed.

AACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCTGCA  >  CP009273/246501‑246599
                                                                   |                               
aaCCTCGGAAATACGCTCGGCCCCTTTTGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:19205505/68‑1 (MQ=255)
aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:5739708/68‑1 (MQ=255)
aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:5397119/68‑1 (MQ=255)
aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:4753565/68‑1 (MQ=255)
aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:3978/68‑1 (MQ=255)
 aCCTCGGAAATACGCTCGGCCCCTTTGGTGCCGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 >  1:29353369/1‑67 (MQ=255)
 aCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 >  1:20752987/1‑67 (MQ=255)
 aCCTCGGAAATACGCTCGGCACCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATc                                <  1:16465434/68‑1 (MQ=255)
    tCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGa                             <  1:16401682/68‑1 (MQ=255)
     cGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAg                            <  1:10674900/68‑1 (MQ=255)
        aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:21717179/67‑1 (MQ=255)
        aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:17895585/67‑1 (MQ=255)
         aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGt                         <  1:19589387/67‑1 (MQ=255)
         aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        >  1:25549497/1‑68 (MQ=255)
         aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        <  1:17851031/68‑1 (MQ=255)
         aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        <  1:16079399/68‑1 (MQ=255)
         aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        <  1:11628129/68‑1 (MQ=255)
            aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     <  1:19660975/68‑1 (MQ=255)
            aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     >  1:18770351/1‑68 (MQ=255)
             cGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAg                    <  1:15120640/68‑1 (MQ=255)
             cGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAg                    <  1:11175119/68‑1 (MQ=255)
              gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:33617962/1‑68 (MQ=255)
              gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:20756186/1‑68 (MQ=255)
              gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:27901266/1‑68 (MQ=255)
              gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   <  1:24442643/68‑1 (MQ=255)
              gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:12913992/1‑68 (MQ=255)
              gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:1715091/1‑68 (MQ=255)
              gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:2938782/1‑68 (MQ=255)
              gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGGCAGTAAATCCGAGCGTGAAAGc                   >  1:7867817/1‑68 (MQ=255)
                tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:21187671/67‑1 (MQ=255)
                tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:26490652/67‑1 (MQ=255)
                tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:23683670/67‑1 (MQ=255)
                tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:25671710/67‑1 (MQ=255)
                tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:9782102/67‑1 (MQ=255)
                tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:27500884/67‑1 (MQ=255)
                tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:20514222/67‑1 (MQ=255)
                tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:19009555/67‑1 (MQ=255)
                tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:16871387/67‑1 (MQ=255)
                tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:20166441/67‑1 (MQ=255)
                tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:3369263/67‑1 (MQ=255)
                tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:14188236/67‑1 (MQ=255)
                 cGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCAtt                <  1:24881126/68‑1 (MQ=255)
                   gCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTa               >  1:17087513/1‑67 (MQ=255)
                     cccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATc             <  1:32579503/67‑1 (MQ=255)
                      ccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcg            >  1:24006263/1‑67 (MQ=255)
                       cTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgcc          <  1:6799381/68‑1 (MQ=255)
                        tttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgcc          >  1:30120766/1‑67 (MQ=255)
                         ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:28232927/68‑1 (MQ=255)
                         ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:2383322/68‑1 (MQ=255)
                         ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:9659929/68‑1 (MQ=255)
                         ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:9243864/68‑1 (MQ=255)
                         ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:81391/68‑1 (MQ=255)
                         ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:27266674/68‑1 (MQ=255)
                         ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:2870368/68‑1 (MQ=255)
                         ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:32636266/68‑1 (MQ=255)
                         ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:31038431/68‑1 (MQ=255)
                         ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:32518477/68‑1 (MQ=255)
                         ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:21095353/68‑1 (MQ=255)
                         ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:23582685/68‑1 (MQ=255)
                         ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:22611226/68‑1 (MQ=255)
                         ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:14732206/68‑1 (MQ=255)
                          tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:17928770/1‑67 (MQ=255)
                          tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:3468344/1‑67 (MQ=255)
                          tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:4095321/1‑67 (MQ=255)
                            gTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     >  1:30354509/1‑68 (MQ=255)
                             tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:3467015/1‑67 (MQ=255)
                             tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:13580603/1‑67 (MQ=255)
                             tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:19356601/1‑67 (MQ=255)
                             tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:14542583/1‑67 (MQ=255)
                             tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:3588987/1‑67 (MQ=255)
                             tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:34313828/67‑1 (MQ=255)
                             tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:2214443/67‑1 (MQ=255)
                             tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:9473630/67‑1 (MQ=255)
                             tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:1029188/67‑1 (MQ=255)
                              gacgacAATAATGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    <  1:5598155/67‑2 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:6592134/68‑3 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:13576161/68‑3 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:7514940/68‑3 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:18571857/68‑3 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:18542525/68‑3 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:13330932/68‑3 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:8684881/68‑3 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:22518775/68‑3 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   >  1:12865625/1‑66 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:11086378/68‑3 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   >  1:24392408/1‑66 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:10459743/68‑3 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    <  1:27177948/67‑2 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    <  1:6019691/67‑2 (MQ=255)
                              gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    <  1:26452394/67‑2 (MQ=255)
                               acgacAATAAAGTTGATTGTCAACAGAGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:25570604/67‑3 (MQ=255)
                                cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:14788864/67‑4 (MQ=255)
                                cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:13440568/67‑4 (MQ=255)
                                cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:14129016/67‑4 (MQ=255)
                                cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:22816376/67‑4 (MQ=255)
                                cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:27880936/67‑4 (MQ=255)
                                cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:26595257/67‑4 (MQ=255)
                                cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:25034480/67‑4 (MQ=255)
                                        aaGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:22242281/58‑3 (MQ=255)
                                        aaGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:22283138/58‑3 (MQ=255)
                                                                   |                               
AACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCTGCA  >  CP009273/246501‑246599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑