| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,251 | A→C | 5.1% | A692A (GCA→GCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,251 | 0 | A | C | 5.1% | 967.3 / 7.1 | 333 | A692A (GCA→GCC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base A (124/187); new base C (2/19); total (126/207) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.65e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 338 total aligned reads displayed.
ACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGC > CP009273/1703185‑1703318 | aCCGGCTAATGCGGAGCCAGAACAACAGGATGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAc < 1:12307257/68‑1 (MQ=255) cGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgc > 1:18230634/1‑68 (MQ=255) cGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgc > 1:20198519/1‑68 (MQ=255) gtcTAATGCTGAGCCAGAAGAACATGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg < 1:27356123/66‑1 (MQ=18) ggCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg < 1:16254201/68‑1 (MQ=255) gccTAATGCGGACCCAGAATAACAGGATGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg < 1:10000187/66‑1 (MQ=17) gCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg > 1:6157440/1‑67 (MQ=255) cTAATGCGGATCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCTTCGAAGCGGCTATTGCAcgcg < 1:25642581/66‑1 (MQ=255) cTAATGCGGATCCAGAAGAACAGGTCGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg < 1:32084785/66‑1 (MQ=255) cTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGcc > 1:4477296/1‑68 (MQ=255) aaTGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCaa > 1:27084657/1‑68 (MQ=255) ctccGGACCCAGAACAACAGGGTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATGGCACGCGCCaaa < 1:10302989/65‑1 (MQ=17) gCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc > 1:24730087/1‑68 (MQ=255) gCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc > 1:20369515/1‑68 (MQ=255) gCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc > 1:26734571/1‑68 (MQ=255) gCGGACCCAGAAGAACAGGTCGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc < 1:22441345/68‑1 (MQ=255) gCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCa > 1:17401870/1‑68 (MQ=255) cccAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCa < 1:33434755/67‑1 (MQ=255) ccAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCaa > 1:29719485/1‑68 (MQ=255) cAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:2912219/68‑1 (MQ=255) cAGAACAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:24009008/68‑1 (MQ=255) cAGAACAACAGGTGGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:5730592/68‑1 (MQ=255) aagaaCAGGTTGATCCGCGCAAAGCTGCCGTCGCAGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTg > 1:3084518/1‑68 (MQ=255) gaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGa > 1:22039066/1‑68 (MQ=255) caaCAGGTCGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGa < 1:18699/67‑1 (MQ=255) accAGGGTGATCCGCGATAAGCGGCCCTCGTAGCGGCTATAGCCCGCGCCAAAGCACGCAAGCTGGaa < 1:17795150/66‑1 (MQ=9) aCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCGAAGCTCGCAAGCTGGAAc > 1:17630497/1‑68 (MQ=255) aCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCCCGCAAGCTGGCAc > 1:21226493/1‑68 (MQ=255) aGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACa > 1:26397154/1‑67 (MQ=255) gctGATCCCCGCAAACCTGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa < 1:2098594/66‑1 (MQ=14) gTTGATCCGCGCAAAGCTGCCGTCGACGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACCGCa > 1:214983/1‑68 (MQ=255) ttGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa > 1:11733203/1‑67 (MQ=255) tggATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa < 1:8698921/65‑1 (MQ=255) tagATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGTGCCAAAGCACGCAAGCTGGAACAGc < 1:33916748/64‑1 (MQ=255) aTCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:25440782/1‑68 (MQ=255) tCCTCGTAAACCTGCCGTCGAAGCCGCTATAGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:7674628/68‑1 (MQ=14) tCCGCGCAAAGCTGCCGTCTAAGCGGCTATTGCACGCGCCAAAGCACGCAAGATGGAACAGCAACAgg > 1:341417/1‑68 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCTGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:8371131/68‑1 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCTGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:31479631/68‑1 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:19824255/68‑1 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:32680795/68‑1 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:33549567/68‑1 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:16839307/68‑1 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:11536733/1‑67 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg < 1:34694795/67‑1 (MQ=255) tCCGAGAAAAGCAGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:29279536/68‑1 (MQ=14) tCCCCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:13084519/68‑1 (MQ=255) tCCCCGCAAACCTGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:31953587/68‑1 (MQ=14) tCCCCGCAAACCTGCCCTCGAAGCTGCTATCGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:25091388/68‑1 (MQ=14) cctcgcAAACCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGc < 1:33021426/65‑1 (MQ=255) ccGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:33103070/1‑66 (MQ=255) ccGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:16155316/1‑66 (MQ=255) ccGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGc < 1:22372362/68‑1 (MQ=255) gtaaaGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt < 1:14353125/66‑1 (MQ=255) gcAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:30682713/1‑68 (MQ=255) gcAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt < 1:16103031/68‑1 (MQ=255) gcAAACCTGCCGTCGAAGCTGCTATCGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt < 1:195975/68‑1 (MQ=14) aaaCCTGCCGTGGAAGCGGCTATGCCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATg < 1:23771502/67‑1 (MQ=14) aaGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACCGCCACAGGCTAATGCg > 1:8869229/1‑68 (MQ=255) accTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCgg < 1:17023151/66‑1 (MQ=255) gCTGCCGTCGCAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAAAAGGCTAAAGCGGt > 1:10840429/1‑68 (MQ=18) cTGCCGTTGAAGCTGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:13790175/68‑1 (MQ=255) cTGCCGTGGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:11859186/68‑1 (MQ=11) cTGCCGTCGAAGCTGCTATAGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:4266778/68‑1 (MQ=14) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:28601613/66‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:4540475/66‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:3962310/66‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:1026863/66‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:8515794/67‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:18834209/67‑1 (MQ=255) tGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTAc < 1:18012601/68‑1 (MQ=255) tGCCGTCGAAGCCGCTATAGCACGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGTAc < 1:7885799/68‑1 (MQ=14) ggCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGTAACAGCAACAGGCTAATGCGGTAc < 1:32313754/67‑1 (MQ=255) cgCCCTCGAAGGTGCTATTGCTCGCGCCTAATCTCGAAATATTGAAAAGCAACAGGCTAATGCGGTa < 1:18541909/66‑1 (MQ=2) gCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTAcc > 1:27922154/1‑68 (MQ=255) gCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTAcc > 1:33204496/1‑68 (MQ=255) cGTCGAAGCGGCTATTGCCCGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:19220301/67‑1 (MQ=255) cGTCGAAGCGGCTATTGCACGCGCCAAAGCTCGCAAGCTGTAACAGCAACTGGCTAATGCGGTACCa < 1:31170062/67‑1 (MQ=255) cGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCag > 1:13439172/1‑68 (MQ=255) cGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:3738124/67‑1 (MQ=255) tCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaa > 1:23113665/1‑68 (MQ=255) cGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaag < 1:34193193/68‑1 (MQ=255) gAAGCGGATATGGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaata < 1:10482901/68‑3 (MQ=17) aaGCGGCTATTGCCCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:26094496/67‑1 (MQ=255) tgCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:21408420/66‑1 (MQ=255) tgCTATGGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:23216353/66‑1 (MQ=14) agCTATCGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:15457640/66‑1 (MQ=11) aTTGCCCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGa < 1:19302297/68‑1 (MQ=255) tGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAt > 1:6944103/1‑67 (MQ=255) tGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAt > 1:31850269/1‑67 (MQ=255) tGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAt > 1:5365479/1‑67 (MQ=255) tGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAt > 1:14935221/1‑67 (MQ=255) gCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:28241191/1‑68 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:7245879/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:6746126/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:8062425/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:15637238/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:29878529/1‑67 (MQ=255) aCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc < 1:21853601/68‑1 (MQ=255) aCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCcgc > 1:24252742/1‑68 (MQ=255) | ACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGC > CP009273/1703185‑1703318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |