| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 417,885 | T→G | 11.6% | intergenic (+70/‑89) | proY → / → malZ | proline‑specific permease/maltodextrin glucosidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 417,885 | 0 | T | G | 11.6% | 1408.6 / 35.4 | 468 | intergenic (+70/‑89) | proY/malZ | proline‑specific permease/maltodextrin glucosidase |
| Reads supporting (aligned to +/- strand): ref base T (25/380); new base G (57/3); total (85/383) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 0.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 524 total aligned reads displayed.
CTTGCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGATCAGAT > CP009273/417818‑417952 | cTTGCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGt < 1:9779887/68‑1 (MQ=255)cTTGCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGt < 1:19926420/68‑1 (MQ=255)cTTGCCTTCTCTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGt < 1:12842237/68‑1 (MQ=255) gTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCGCCGgccgcc > 1:10019613/1‑68 (MQ=255) gTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGgcctcc > 1:21540350/1‑68 (MQ=255) gTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGgccgcc > 1:8029634/1‑68 (MQ=255) cTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:17694901/68‑1 (MQ=255) cTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:27142841/68‑1 (MQ=255) cTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:34744932/68‑1 (MQ=255) cTGTAAGCCGGTTCAGGACGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:18696789/68‑1 (MQ=255) gTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTcccc < 1:3936840/68‑1 (MQ=255) gTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTcccc < 1:31685876/68‑1 (MQ=255) gTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTcccc < 1:27673733/68‑1 (MQ=255) gTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTcccc < 1:10874566/68‑1 (MQ=255) aaGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCa < 1:9349306/68‑1 (MQ=255) ccGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCGCCGGCCGCGTCCCCCaagg > 1:8999894/1‑66 (MQ=255) ccGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCTGCTCCCCCAAat > 1:11623100/1‑68 (MQ=255) cGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAat < 1:24842670/67‑1 (MQ=255) cGGTGCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGGTATCCGCCCCCGGCCTCCTCCCCCAAat < 1:607465/67‑1 (MQ=255) ggTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGGCGCCGTCCTCGTCGCCCAAatat > 1:11389555/1‑68 (MQ=255) ttCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATc < 1:6294590/67‑1 (MQ=255) tCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATcc < 1:951566/67‑1 (MQ=255) tCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCt < 1:27345965/68‑1 (MQ=255) tCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCG‑CCCCGTCCTCCTCCCCCAAATATCCt < 1:14144671/67‑1 (MQ=255) aggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCTCCTCCCCCAAATATCCTTCAga > 1:7727548/1‑68 (MQ=255) ggaAATCCTGATCCGGCTATTCCGACAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:32513986/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:13283539/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:34004765/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:32634540/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:15518636/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:26734817/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:1572019/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCTCCTCCCCCAAATATCCTTCAga < 1:31048487/67‑1 (MQ=255) aaTCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatgat < 1:33391054/68‑1 (MQ=255) aaTCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatga < 1:18105691/67‑1 (MQ=255) aaTCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatga < 1:544225/67‑1 (MQ=255) aaTCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatga < 1:26356537/67‑1 (MQ=255) aTCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGatgatg < 1:32941662/68‑1 (MQ=255) tCCTGATCCGGCTATTCCGAAAGTTATCCGGCCCCGGCCTCCGCCCCCAAGTCTCCTTGAGGtgatga > 1:14909122/1‑68 (MQ=255) tCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGAtgatga > 1:17178389/1‑68 (MQ=255) tCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGAtgatga < 1:33740580/68‑1 (MQ=255) tCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGAtgatga < 1:21184945/68‑1 (MQ=255) tCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGAtgatga < 1:11078911/68‑1 (MQ=255) ccTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCGCCTCCCCCAAATATCCTTCAGAGGATGAg > 1:24246690/1‑68 (MQ=255) cTGATCCGTCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGt < 1:11953730/68‑1 (MQ=255) cTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCTCCGCCCCCCAATATGCGTCAGATGAGGAGt > 1:30436866/1‑68 (MQ=255) tGATCCGGCTATTCCGAAAGTTATCCGCGCCCGGCGCCCGCCCCCGAAAGTCCGTGAGATGATGAgag > 1:28664050/1‑66 (MQ=255) tGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCTACGCCCCCAAATAAAAATGAGAAGATGAGTg > 1:29966208/1‑68 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATTATGAGTGAt < 1:6736340/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:7452465/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:30800796/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:8281889/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:7853278/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:22252357/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:33209982/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:5747226/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:34369157/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:5227354/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:28140954/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:22408098/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:23229104/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:27477990/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:23986818/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:8565657/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATc < 1:25518770/68‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCGCCGCCCCCAAAAATCCGTCAGATGATGAGTGAt > 1:29157202/1‑67 (MQ=255) ggCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTg < 1:26117270/68‑1 (MQ=255) cTATTCCTAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:22864634/67‑1 (MQ=255) cTATTCCGAATGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGTTGAGTGATCCTGc < 1:20468251/67‑1 (MQ=255) cTATTCCGAAAGTTATCCTCCCCCGTCCTCCTCCCCGAAATATCCTTCAGATGATGAGTGATACTGc < 1:32169663/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:20098465/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:21291633/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:20863877/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:21698227/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:18582367/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:1453720/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:31237954/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:4812657/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:4338464/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:4562366/67‑1 (MQ=255) tCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAg < 1:10298273/68‑1 (MQ=255) tCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAg < 1:18915405/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:19273755/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:3139389/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTAAGATGATGAGTGATCCTGCATTAgg < 1:16105804/68‑1 (MQ=255) cGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGc < 1:28936435/68‑1 (MQ=255) aaGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTAt < 1:19584220/68‑1 (MQ=255) aaGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTAt < 1:12287512/68‑1 (MQ=255) aaGTTATCCGCCCCCGACCTCCTCCCCCAAAAAACCGTCAGATCATGAGTGATGCTGGAGTAGGCAAt > 1:17560716/1‑68 (MQ=255) aGTTATCCGCCCCCCGCCGCCTCCCCCAAATATACTTAAGATGATGAGTGATCCTGCATTATGGTATg > 1:32737853/1‑68 (MQ=255) gTTATCCGCCCCCGTCCTCCGCCCCCAAAGAACCTTAAGAGGATTAGTGTACCAGCATTATGCGATgg > 1:15193610/1‑68 (MQ=255) ttATCCGCCCCCCTCCAACTCCCCCAAAAATAAATGAGATTATTAGTGATCCAGCATTAGGCTATTGc > 1:3554570/1‑68 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGt < 1:16584722/68‑1 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGt < 1:13634070/68‑1 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGt < 1:32038887/68‑1 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGt < 1:29787051/68‑1 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGt < 1:1069670/68‑1 (MQ=255) ccGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGATCa < 1:6913258/68‑1 (MQ=255) ccGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGATCa < 1:13079287/68‑1 (MQ=255) tcctcctccCCCAAATATACTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGATAAGAt > 1:8903303/1‑68 (MQ=255) | CTTGCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGATCAGAT > CP009273/417818‑417952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |