| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,441 | A→C | 7.0% | intergenic (+480/+134) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,441 | 0 | A | C | 7.0% | 859.5 / 7.6 | 340 | intergenic (+480/+134) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base A (182/115); new base C (10/19); total (192/148) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.07e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 345 total aligned reads displayed.
TTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGT > CP009273/3263374‑3263507 | tctttTGGGTATAGTGTCGTGGACAGTCATTAATATTTCTGCCCCTCCAAAAGCAAAAACCCGCCGaa > 1:1493134/1‑68 (MQ=255) tttGGGTATAGTGTCGTGGACAGTCATTCATCTTTGTGCCCCTACAAAAGCAAAAACCCGCCGCAGcc > 1:12623421/1‑67 (MQ=11) ttGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCgg < 1:8369336/68‑1 (MQ=35) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCggg < 1:29515569/68‑1 (MQ=35) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt < 1:28521235/68‑1 (MQ=35) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAACCAAAAACCCGCCGCAGCGGGt > 1:9354926/1‑68 (MQ=255) gggTATAGTGTCGTGGACAGTCATTAATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt > 1:21654110/1‑68 (MQ=25) ggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt > 1:22802659/1‑67 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttt > 1:29721055/1‑68 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtt < 1:30418478/67‑1 (MQ=35) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTACAAAAGCAAAAACCCGCCGAATCGGGgtt > 1:18914420/1‑68 (MQ=11) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTACAAAAGCAAAAACCAGCCGAAGCGGGttt > 1:14715608/1‑68 (MQ=255) ataGTGTCGTGGCCAGTCATTCATCTATCGCACCCTCCACAAACAAAAAACACCCGAAGAGGGatttt > 1:29194528/1‑68 (MQ=2) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTGCAAAAGCAAAAACCCGCCGCAGCGGGgtttt > 1:20545917/1‑68 (MQ=11) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt > 1:1566084/1‑68 (MQ=35) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTACAAAACCAAAAACACGCCGAAGCGCGtgttt > 1:34210679/1‑68 (MQ=11) taGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTa < 1:249117/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGACGCGGGTTTTTAc > 1:34316221/1‑68 (MQ=25) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:34823695/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:33097750/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc > 1:6430428/1‑68 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:24530336/68‑1 (MQ=35) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCCAAAGCAAAAACCCGCCGAAGCCGGGTTTTACg > 1:2774837/1‑68 (MQ=11) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTa > 1:7289659/1‑66 (MQ=33) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTACAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:23830400/1‑68 (MQ=18) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa > 1:24289628/1‑68 (MQ=35) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCAGAATCGGGTTTTTACGTAAACCa > 1:17157637/1‑68 (MQ=255) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCAGAAGCCGGTGTTTACGTAAACCa > 1:14104549/1‑68 (MQ=11) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCAGCCGAAGCGCGTTTTTACGTAAACCa > 1:6001209/1‑68 (MQ=255) ggACAGTCATTCATCTTTCGGCCCCTACAAAAGCAAAAACCCGCCGAAGCGGCTTTTTACGTAAACCa > 1:18685018/1‑68 (MQ=11) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGACGCGGGGTTTTACGTAAACCAgg > 1:7932861/1‑68 (MQ=255) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:9665991/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:22582479/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:32833176/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:10082818/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:5124370/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:29477082/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:11067550/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:12934159/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:12157498/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGACCATACAAAAGCAAAAACAAGCAGAATCCGCTTTTTACGTAAACCAgg > 1:5440521/1‑68 (MQ=2) aGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTg > 1:8965892/1‑68 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa > 1:33382796/1‑67 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa < 1:16143441/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa < 1:13738692/67‑1 (MQ=35) tcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTg > 1:32603631/1‑68 (MQ=35) tcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTg > 1:8353934/1‑68 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:29103109/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:28270363/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:26563177/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:33302760/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:27079306/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:25651439/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:15561308/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:16473515/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:21195408/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:19677538/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:22365622/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGAGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:15333692/1‑67 (MQ=25) tCTTTCTGCCCCTCCACAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc < 1:21793063/68‑1 (MQ=25) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc > 1:7493782/1‑68 (MQ=35) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGa > 1:32168911/1‑68 (MQ=35) ttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGAt > 1:25100890/1‑68 (MQ=35) tCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATa > 1:25386872/1‑68 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:4738627/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:19900963/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:33879514/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:34643668/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:14447495/1‑67 (MQ=35) ccccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGcc > 1:2730612/1‑68 (MQ=35) ccccTCCAAAAGC‑AAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGcc > 1:19110096/1‑67 (MQ=255) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGcc > 1:23727052/1‑67 (MQ=35) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCg > 1:12394455/1‑68 (MQ=35) cccTCCAAAAGCAAAAACCCGACGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCg > 1:23429726/1‑68 (MQ=255) aaaaTCACAAACCCGCCGCACCGGTTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGctttct < 1:30947010/68‑1 (MQ=14) aaaaTCAAAAACCCGCCGTAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttct < 1:15964894/68‑1 (MQ=255) aaGCAAAAACGCGCCGCATCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttcttt < 1:10307079/68‑1 (MQ=14) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCtttt > 1:26158521/1‑68 (MQ=40) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCtttt > 1:24073447/1‑68 (MQ=40) gtaaaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg > 1:20797425/3‑68 (MQ=14) caaaCCCGCCGTACCGGGTTATTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:11386652/67‑1 (MQ=11) aaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:27660746/68‑1 (MQ=35) aCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata > 1:23262382/1‑68 (MQ=35) aCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata > 1:26731294/1‑68 (MQ=35) cccGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata > 1:22043993/1‑67 (MQ=35) cccGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTGTGGGGtata > 1:30631747/1‑67 (MQ=255) ccgccgCACCGGTTTATTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGc < 1:9135160/68‑1 (MQ=11) gccgTACCGGGTTTTTACGTACATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:8799130/68‑1 (MQ=11) gccgTACCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:8688328/68‑1 (MQ=14) gccgTACCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:17781130/68‑1 (MQ=255) gccgCACCGGGTTTTTACGTACATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:6701015/68‑1 (MQ=11) gccgCACCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:4983747/68‑1 (MQ=255) gccgCACCGGGTTATTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:33531421/68‑1 (MQ=14) gccgAATCGGTTTTTTACGTAAAGCAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:4371651/68‑1 (MQ=11) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:15804434/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:32210218/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:12007287/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:3847420/68‑1 (MQ=40) gccgAACCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:28804816/68‑1 (MQ=255) gAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgtcgt < 1:13566811/68‑1 (MQ=40) | TTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGT > CP009273/3263374‑3263507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |