| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3921522 | 426 (0.960) | 23 (0.060) | 9/100 | NT | 5.5% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 403 (1.010) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
Only 100 of 132 total aligned reads displayed.
TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3921452‑3921522‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < CP009273/3921534‑3921468 TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:20690947/1‑68TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:23454864/1‑68TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:16346950/1‑68TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:6828988/1‑68TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:15164942/1‑68TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:26843382/1‑68TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:26799794/1‑68 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:18936135/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:19921147/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:18191493/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC < 1:19956698/67‑1 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:25959153/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:7219483/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC < 1:36211224/67‑1 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:28569182/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC < 1:8693108/67‑1 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:2905569/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:30446480/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:31489355/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC > 1:3572906/1‑67 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC < 1:3516948/67‑1 TCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCC < 1:33401434/67‑1 aAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGC < 1:18379067/67‑1 CAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGC < 1:22780956/68‑1 AGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTGTCTGCTGTAATAATTTATCGCCGC < 1:34192436/67‑1 TGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTAACGCCGCCc > 1:2845377/1‑66 CGAGCGCGTCCCTTCTCTGCTGTATTAATTTTTCGCCGCCTGCTCCGACGCTGGCGGCGATAAATTAT > 1:21465105/1‑68 CCCTTCTCTGCTGTAATAATTTATCGCCGCCTGCTCAGCCGCTGGCGGCGATTAATTTTTAGAGCAGA > 1:17853785/1‑68 CTTCTCTGCTGTAATAATTTATCGCCGCCTGCTCAGGCGCTGGGGGCGTTTAATTATTACAGCAGAGA > 1:1222388/1‑68 TCTCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGCTAAAGTAGTACAGCAGAGAAG > 1:24757949/1‑68 CTCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGG > 1:29930500/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGCCGCTGGCGGCGATAAATTTTTTCAGCAGAGAAGGG > 1:16637558/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:14764484/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:7078127/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:27356913/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:1089440/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:12229241/1‑68 TCTGCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:18586899/1‑68 GCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGAC > 1:21312124/1‑67 GCTGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGAC > 1:7738935/1‑67 TGTAATAATTTATCGCCGCCTGGTCAGACGCTGGGGGCGATATAGTTTTACAGCAGAGACGGGACGC > 1:31546429/1‑67 TGTAATAATTTATCGCCGCCTGCTCAGCCGCTGGCGGCGATTAATTATTACAGCAGAGAAGGGACGC > 1:6614521/1‑67 TGTAATAATTTATCGCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGC > 1:34769442/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGGTCTCGCGAACAGCA > 1:5815275/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:5815271/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:3987031/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:5854858/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:36871914/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:4646634/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCA > 1:16594859/1‑67 GCCGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGG > 1:1806401/1‑49 CGCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGC < 1:11246775/67‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:33521195/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:8922773/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:24305942/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:9563505/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:21198860/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:29870896/68‑1 GCCTGCTCAGACGCTGGCGGCGATAAATTATCACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG < 1:32322621/68‑1 CCTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTG > 1:20230868/1‑67 CTGCTCCGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:8379881/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGCAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:26779149/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAAGAGCAGCTGGC < 1:19912329/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:36177027/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:9245164/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:7985599/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:3764012/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:4624713/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:6815401/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:34615239/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:27585500/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:34188305/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:1175690/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:13042806/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:13158563/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:13266132/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:13802429/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:13860247/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:13900337/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:1548625/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:19246432/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:20955061/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:23823846/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:2480840/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:11005953/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:25539819/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:26214245/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:27776875/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:27920187/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:32217618/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:32289533/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:33502012/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:33880360/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG < 1:27780219/67‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG < 1:31421192/67‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGG < 1:34601703/67‑1 CTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGAACGCTCTCGCGAACAGCAGCTGGC < 1:2717521/68‑1 CTGCTCAGACGCTGGCGGCGATAAATTATATCAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < 1:10971116/68‑1 CTGCTCAGACGCGGGCGGCGATAAATTATTACAGCAGAGATGGGACGCTCTCGCGAACAGCAGCTGGC < 1:25482472/68‑1 CTGCTACGACGCTGGCGTCGATAAATTATTACAGCAGAGAAGCGACGCTCTCGCGAACAGCAGCTGG < 1:5014704/67‑1 TTCAGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3921452‑3921522‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccTGCTCAGACGCTGGCGGCGATAAATTATTACAGCAGAGAAGGGACGCTCTCGCGAACAGCAGCTGGC < CP009273/3921534‑3921468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |