| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP009273 | 4,175,921 | Δ18 bp | 12.9% | coding (644‑661/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4175920 | 587 (1.320) | 70 (0.190) | 28/92 | NT | 12.9% | coding (643/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| ? | CP009273 | 4175939 = | 459 (1.260) | coding (662/4224 nt) | rpoC | RNA polymerase, beta prime subunit | |||||
Only 100 of 290 total aligned reads displayed.
GAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4175844‑4175920‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaagcgtaTCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCTGCC > CP009273/4175939‑4176005 GAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCTAAA < 1:32823623/68‑1 AGAGCATGGATCTGGAGCAAGAGTGCGAGCAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:36827091/1‑68 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:5621963/1‑68 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:31647098/1‑68 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:14714392/1‑68 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:13806626/1‑68 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:36367238/1‑68 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:29992875/1‑68 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:27192885/1‑68 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:5940226/1‑68 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:6503819/1‑68 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:1169734/1‑68 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:29499989/1‑68 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:11046775/1‑68 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:9558238/1‑68 AGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACC > 1:29168902/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:23801523/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:25753851/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:2552431/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:35702362/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:23209143/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:22771169/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:2128378/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:28215479/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:29882863/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:33839907/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:10362094/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:36530150/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:5114288/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:9205497/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:9702018/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:10012761/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:1971581/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:19926270/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:12990068/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:11478130/1‑68 AGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:20629286/1‑68 AGCATGGATCTGGAGCAAGACACCGAACAGCTGCGTGAAGAGCTCAACGAAACCAACTCCGAACCCA > 1:28953123/1‑67 GCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAA > 1:26514212/1‑67 ATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAGGGGCTGAACGAAACCAACTCCGAAACCAAGCG > 1:34736539/1‑68 ATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCG > 1:20730519/1‑68 ATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCG < 1:28033200/68‑1 ATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGC < 1:15823845/67‑1 TGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGT < 1:17594921/68‑1 TGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGT < 1:32251863/68‑1 TGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGT < 1:17913806/68‑1 TGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGT < 1:19452605/68‑1 TGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGT < 1:29737781/68‑1 TGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGT < 1:15273414/68‑1 TGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGT < 1:5716900/68‑1 TGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGT < 1:7182946/68‑1 TGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGT < 1:8545822/68‑1 TGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGT < 1:22073426/68‑1 TGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGT < 1:10637278/68‑1 GATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTA > 1:26007959/1‑67 CTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAA < 1:22464777/68‑1 AGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACT > 1:3419651/1‑67 AGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACT > 1:36938744/1‑67 AGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAA > 1:4060487/1‑68 GCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCG < 1:16709971/68‑1 GCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCG < 1:24105836/68‑1 GCTGCGTGAAGAGCTGAACGAAACCAACTCCGAATCCAAGCGTATCAAACTGGTGGAAGCGTTCGATC > 1:2014628/1‑68 GCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCGGGATGCGTTCGTTC > 1:20261874/1‑68 GCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGT < 1:30924054/68‑1 GCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGT < 1:2110393/68‑1 GTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTC < 1:25151946/67‑1 GTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTC < 1:28454210/67‑1 AAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGT > 1:5320468/1‑68 GAGCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTA > 1:24498410/1‑67 AGCTGAACGAAACCAACTCGGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTA < 1:22978819/66‑1 GCTGAACGAAACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACA > 1:12004455/1‑68 AACCAACTCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGT < 1:7702529/68‑1 TCCGAAACCAAGCGTATCTAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGAT < 1:13237968/68‑1 TCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGAT < 1:4382996/68‑1 TCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGAT < 1:12381699/68‑1 TCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGAT < 1:30529809/68‑1 TCCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGAT < 1:7217187/68‑1 CCGAAACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGAT > 1:23386927/1‑67 CCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACC > 1:17979638/1‑68 CCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACC < 1:25306654/68‑1 CCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACC > 1:32013609/1‑68 CAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCG < 1:13398223/68‑1 AAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGT < 1:5185801/68‑1 AAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGT < 1:12563274/68‑1 AGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTT < 1:16167538/68‑1 CGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGT > 1:5464816/1‑65 GTATCACACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCTG < 1:31309523/68‑1 GTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGTCCGTTCTG < 1:9113884/68‑1 GTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCTG < 1:811996/68‑1 GTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCTG < 1:8692934/68‑1 GTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCTG < 1:2188092/68‑1 GTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCTG < 1:20951553/68‑1 GTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCTG < 1:13204073/68‑1 GTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCTG < 1:18855933/68‑1 GTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCT < 1:35045192/67‑1 GTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCT < 1:19350311/67‑1 GTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCT < 1:3305756/67‑1 GTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCT > 1:18656130/1‑67 GTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTC < 1:26198725/66‑1 ATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCTGCC < 1:33499522/68‑1 GAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4175844‑4175920‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accaagcgtaTCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCTGCC > CP009273/4175939‑4176005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |