| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 66560 = | 328 (0.740) | 510 (1.890) +CGTTTTTTTGGATGGAGGAATT |
39/68 | NT | 66.9% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 502 (1.130) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
Only 100 of 1142 total aligned reads displayed.
TTATCCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/66626‑66560‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAA < CP009273/3509273‑3509208 |||||||||||||||||||||| TCCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT < 1:22983218/68‑1 TCCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT > 1:2949063/1‑68 TCCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT > 1:4344213/1‑68 CCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTT > 1:18002932/1‑68 CCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTT > 1:27191530/1‑68 ATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTT > 1:15992543/1‑68 GATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGt > 1:4933272/1‑67 GATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGG > 1:9709565/1‑68 ATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA > 1:10771867/1‑68 ATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGA > 1:13981859/1‑68 ATTAGCGGATCCTACCTGACGC‑TTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGAT > 1:7385402/1‑68 CGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAG > 1:22166499/1‑68 GGATCCTACCTGACGCTTTTTATCGCACCTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGG > 1:33297313/1‑68 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGG > 1:14186204/1‑68 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGG > 1:31835236/1‑68 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGG > 1:12040162/1‑68 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAG < 1:12811173/67‑1 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGA < 1:29053897/66‑1 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACACGTTTTTTTGGATGGAGG > 1:33655461/1‑68 CCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAAT > 1:7041045/1‑67 ACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCAT > 1:23266700/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATG > 1:3298488/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATG > 1:31556571/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATG > 1:5895367/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATG > 1:2679786/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATG > 1:14677120/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATG > 1:13529146/1‑68 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACACGTTTTTTTGGATGGAGGAATTAATG > 1:11266985/1‑68 TGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACACGTTTTTTTGGATGGAGGAATTCATGAA > 1:27871236/1‑68 CGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAA > 1:4595910/1‑68 GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAA > 1:21710198/1‑68 GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAA > 1:35820831/1‑68 GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAA > 1:12603092/1‑68 GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAA > 1:3051949/1‑68 GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAA > 1:19120595/1‑68 TTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATC > 1:26162566/1‑67 TCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGC > 1:2830928/1‑66 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTT < 1:27668091/67‑1 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTT < 1:22517917/67‑1 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTT < 1:16650009/67‑1 AACTCTCTACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTT < 1:23427849/67‑1 ACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTG > 1:25242964/1‑68 ACTGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTG > 1:2583544/1‑68 TGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG < 1:5525052/68‑1 TGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGG > 1:13775908/1‑67 TGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGG > 1:37014684/1‑67 TGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGG > 1:17619835/1‑67 TGTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGG > 1:22809860/1‑67 TGTTTCTCCATACCCG‑TTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGC > 1:5115961/1‑68 GTTTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGC > 1:3843959/1‑68 TTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG > 1:2652370/1‑68 TTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG > 1:10007011/1‑68 TTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG > 1:1967627/1‑68 TTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG > 1:23773738/1‑68 TTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG > 1:33865507/1‑68 TTCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG > 1:28687519/1‑68 TCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGG < 1:6121025/68‑1 TCTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGG < 1:16251997/68‑1 CTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGG < 1:19995864/68‑1 CTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGG > 1:3549932/1‑68 CTCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGG > 1:8073561/1‑68 TCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG > 1:34155569/1‑68 TCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG < 1:7536390/68‑1 TCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG > 1:10271633/1‑68 TCCATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGG < 1:1519455/68‑1 CATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC < 1:21463779/68‑1 CATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC > 1:6453419/1‑68 CATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC > 1:20343756/1‑68 ATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCA < 1:34606783/68‑1 ATACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCA < 1:29679553/68‑1 ACCCGTTTTTTTGGATGGTGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG > 1:27456483/1‑68 ACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG < 1:13335964/68‑1 ACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG < 1:8427234/68‑1 ACCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAG < 1:8812766/68‑1 CCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGT > 1:30150065/1‑68 CCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGT > 1:30874920/1‑68 CCCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGT > 1:32264170/1‑68 CCGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTA < 1:17271176/68‑1 CGTTTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTA > 1:19479739/1‑67 TTTTTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCC < 1:3261830/67‑1 TTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTG < 1:36475055/68‑1 TTTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTG < 1:9240511/68‑1 TTGGATGGAGGAATTCATTAAGAAAAATCGCGCGTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGC < 1:21064308/68‑1 TTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGC < 1:7851460/68‑1 TTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGC < 1:4003222/68‑1 TTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGC < 1:24120796/68‑1 TTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGC < 1:25039142/68‑1 TTGGATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGC < 1:2557548/68‑1 ATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA > 1:116958/1‑68 ATGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTG < 1:14446520/67‑1 TGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGAT < 1:15549154/68‑1 TGGAGGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGAT < 1:18714692/68‑1 GGAATTCATGAAGAAAAATCGCTCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGAT < 1:3611303/67‑1 GGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATA > 1:31322832/1‑68 GGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGAT < 1:18357058/67‑1 GGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGAT < 1:17029401/67‑1 GGAATTCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGAT < 1:34987056/67‑1 GGAATTCATGAAGAAAAATCGCGCTTTTTTCAAGTGGGCAGGGGGCAAGTTTCCCCTGCTTGATGATA > 1:24527214/1‑68 TCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAA > 1:2076005/1‑67 TCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAA > 1:36779216/1‑67 |||||||||||||||||||||| TTATCCATAAGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/66626‑66560‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAA < CP009273/3509273‑3509208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |