| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP009273 | 505,358 | 14 bp→ATGTCGATTATTTC | 6.0% | coding (1465‑1478/2505 nt) | copA ← | copper transporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 505357 | 357 (0.800) | 17 (0.050) +ATGTCGATTATTTC |
12/84 | NT | 6.0% | coding (1479/2505 nt) | copA | copper transporter |
| ? | CP009273 | 505372 = | 355 (0.800) | coding (1464/2505 nt) | copA | copper transporter | |||||
CTGGCGCGTTGCAGCGCGTCAGCGTCCCGCACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/505292‑505357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCGTCGCCAGCCCCAGCGCACACGGACAGGCAATAATCAGTACCGTGGTGGCAATCACCAGGG > CP009273/505372‑505436 |||||||||||||| CTGGCGCGTTGCAGCGCGTCAGCGTCCCGCACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCGAT > 1:10152649/1‑68 AGCGCGTCAGCGTCCCGCACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTT > 1:3720888/1‑67 GCGTCAGCGTCCCGCACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGG < 1:616381/68‑1 GTCCCGCACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCA > 1:30374084/1‑68 GTCCCGCACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCG < 1:22191423/65‑1 CCCGCACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAGC < 1:1447603/68‑1 CCCGCACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAG > 1:31602611/1‑67 CCCGCACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAG > 1:185858/1‑67 CCGCACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAGCC < 1:32098780/68‑1 CCGCACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAGCC < 1:19459604/68‑1 CCGCACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAGCC < 1:29686008/68‑1 ACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAGCCCCAG < 1:7347361/68‑1 ACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAGCCCCA < 1:16761628/67‑1 CAGCACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAGCCCCAGCG < 1:17116175/68‑1 ACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAGCCCCAGCGCA < 1:4410847/66‑1 ACGCCAAACTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAGCCCCAGCGCA < 1:486157/66‑1 CTCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAGCCCCAGCGCACACGGACAG > 1:8018101/1‑67 TCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAGCCCCAGCGCACACGGACAGGC < 1:31937177/68‑1 TCAGCCGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAGCCCCAGCGCACACGGACAGGC < 1:14778437/68‑1 CGCCCGCCCGACGCCGATGTCGATTATTTCCGGCGTCGCCAGCCCCAGCGCACACGGACAGGCAATAA < 1:24955956/68‑1 CGCCGATGGCGATTATTTCCGCCGGCGCCAGCCCCAGCGCACACGGACAGGCAATAATCAGTACCGT < 1:24028498/67‑1 TTATATCCCGCGTCCCCAGCCCCCGCGCACACGGACAGGCAATAATCAGTACCGTGGTGGCAATCACC < 1:17378890/68‑1 acaCCGGCGTCGCCAGCCCCAGCGCACACGGACAGGCAATAAACCGTACCGTGGTGG‑AATCACCAGGG < 1:27908780/65‑1 ccCCGGCGCCCCCACCCCCCGCGCACACGGACAGGCAATAATCAGTACCGTGGTGGCAATCACCAGGG < 1:10479517/66‑1 caCCGGCGGCGCCAGCCCCAGCGCACACGGACAGGCAATAATCAGTACCGTGGTGGCAATCACCAGGG < 1:21370212/66‑1 TTCCGGCGTCGCCAGCCCCAGCGCACACGGACAGGCAATAATCAGTACCGTGGTGGCAATCACCAGGG < 1:2773529/68‑1 |||||||||||||| CTGGCGCGTTGCAGCGCGTCAGCGTCCCGCACCAGCACGCCAAACTCAGCCGCCCGCCCGACGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/505292‑505357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCGTCGCCAGCCCCAGCGCACACGGACAGGCAATAATCAGTACCGTGGTGGCAATCACCAGGG > CP009273/505372‑505436 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |