| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 831686 | NA (NA) | 5 (0.010) | 3/92 | NT | NA | noncoding (9/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 831692 | NA (NA) | noncoding (15/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 152 total aligned reads displayed.
ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/831610‑831686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggatgaCATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATAG < CP009273/831692‑831626 ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA > 1:2812347/1‑68ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA > 1:30028389/1‑68ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA > 1:15673134/1‑68 CGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAG < 1:19747094/68‑1 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:979296/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:35856205/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:19706001/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:18662945/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:5010418/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:6246445/1‑68 GTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG > 1:12428701/1‑68 GTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC < 1:36617212/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:14218367/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:7431980/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA > 1:3933386/1‑68 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA > 1:3977689/1‑68 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:24195820/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:8443126/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:23494608/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:23610773/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:3491547/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:12336985/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:8239671/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:25667212/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:2734613/67‑1 AGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATG > 1:27917707/1‑68 GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:25029996/1‑68 GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:25179059/1‑68 GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:3674970/1‑68 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:14936898/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:33307554/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:11461241/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:15449607/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:5793573/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:6740122/1‑67 GGCAACTATCAGCGACGGCCTGTCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:22223273/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:24789466/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:3137622/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:32825621/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:33177708/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:28827816/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:4292216/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:24087369/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:21399245/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:22527699/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:35341233/66‑1 CAGGCATTTTAATTCTTTTCTCAGCCGGATGACATGGCTCATCCGGCTGAGAAATGAATTAAAATG > 1:76812/1‑66 GGCATTTTAATTCTTTTCTCAGCCGGATGAGGTGGCTCATCCGGGTGAGCATAGAATTAACATG > 1:25642596/1‑64 TCTTTTCTCAGCCGGATGACTTGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGC > 1:18547202/1‑67 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:27262089/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:6702415/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:31626856/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:5085996/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:34162754/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:36748975/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:27641146/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:23635853/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:23379788/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:25402711/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:19304357/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:13354884/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:6343446/1‑67 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:79325/1‑67 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:24280891/1‑67 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCTCCAGGCCGTC > 1:32885668/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:14596515/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:1628248/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:1699762/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:18159066/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:21011000/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:21355452/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:11647440/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:2237575/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:34170295/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:2581870/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:26132945/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:26834059/1‑68 CCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:36534441/1‑67 CCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:4378309/1‑67 CGGATGACATGGCTCATCCGGCTGAGAAAAGATTTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:22171886/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:8995654/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:24359751/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:32784354/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:813207/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:15972114/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:22554496/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:29245059/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:5937338/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:28285826/67‑1 GGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCT < 1:30704025/68‑1 GGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCT < 1:10306521/68‑1 GGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCT < 1:10341613/68‑1 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGAT > 1:32099025/1‑68 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA < 1:31234824/67‑1 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA < 1:16895613/67‑1 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA < 1:13123276/67‑1 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA < 1:13079321/67‑1 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA < 1:917427/67‑1 GACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATA > 1:29663112/1‑68 ACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATAG > 1:22435146/1‑68 ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/831610‑831686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggatgaCATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATAG < CP009273/831692‑831626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |