| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2680401 | NA (NA) | 4 (0.010) | 3/90 | NT | NA | noncoding (8/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2680405 | NA (NA) | noncoding (12/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 114 total aligned reads displayed.
TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2680324‑2680401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgccggatgTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTTCC < CP009273/2680405‑2680339 TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:10935722/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:33242499/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:30236828/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:36776866/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:35275780/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:8603051/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:15703720/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCCCATAAGGTGCTGTAATTTTATG > 1:8892742/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGATTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:1732320/1‑68 TGGGCGTGAAGCAGGAAAACATTCGTTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:24951464/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:17827270/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT < 1:6371636/68‑1 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:36157832/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:35432311/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:16487716/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:30503793/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT < 1:14582346/68‑1 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:14323614/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:10605735/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:10561185/1‑68 GGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:32925884/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:24154512/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:4726101/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:28544042/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:20381310/1‑67 GGCGTGAAGCAGGAAAACATTCAGTACGAATGCCTTGGCCCGCATAAGGTGCTGTAATATGATGATG > 1:8419366/1‑67 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:21041304/1‑68 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:18670322/1‑68 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:31456024/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:20242870/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:17689485/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:36576116/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:33546227/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:31826006/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:36668836/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:27641679/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:16759294/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:15518116/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:8870401/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:29552768/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTCCC > 1:13439589/1‑67 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG > 1:4980179/1‑68 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG < 1:6827527/68‑1 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG < 1:1610397/68‑1 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG < 1:7042153/68‑1 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG < 1:12746011/68‑1 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG < 1:12215542/68‑1 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG > 1:25912643/1‑68 TGAAGCAGGAAAACATTCATTTCGAATGGTTTGGGCCGCATAAGGTGCTGTAATTTGATGTTGCCGG < 1:13947514/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGAT < 1:10278520/68‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGAT < 1:5077539/68‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGAT < 1:15054733/68‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:33408221/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:33632882/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:5746705/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:9866084/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:19221157/67‑1 AAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG > 1:29661802/1‑68 AAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG > 1:22343784/1‑68 AAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG > 1:30764754/1‑68 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCC > 1:3376170/1‑68 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCC > 1:25003801/1‑68 TGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCA > 1:19170821/1‑68 TTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTC > 1:6774879/1‑68 TTGATGTTGCCGGATGTTTCCATCCGGCACCATCAAATTACAGCCCCTTATGCGGGCCAAAGCATTCG > 1:16058489/1‑68 GTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATG > 1:3898055/1‑68 GTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAA < 1:14966923/66‑1 GTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAA < 1:9550155/66‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:26055368/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:2461539/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:23687519/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:31674927/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:9612867/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:29635823/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT > 1:3864107/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGTATGT > 1:11287401/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT > 1:13861289/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT > 1:10084045/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT > 1:17266435/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT < 1:19761993/68‑1 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT < 1:19902091/68‑1 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT > 1:23606165/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT > 1:26646410/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT < 1:24792600/68‑1 GGATGTTTCCCTCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTT > 1:7249839/1‑68 GGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTT < 1:26686101/68‑1 GGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTT < 1:20706054/68‑1 GGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTT < 1:35314976/68‑1 GGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTT > 1:6733912/1‑68 GGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTT < 1:23607318/68‑1 GGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTT < 1:33394697/68‑1 GGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTT < 1:15444829/68‑1 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT < 1:27199292/67‑1 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:25734754/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:7208319/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:17081059/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT < 1:1905088/67‑1 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:20128395/1‑67 GTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTTCC < 1:30587280/68‑1 GTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:4800744/1‑66 TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2680324‑2680401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgccggatgTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTTCC < CP009273/2680405‑2680339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |