| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3767664 | NA (NA) | 5 (0.010) | 5/98 | NT | NA | noncoding (69/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3767694 | NA (NA) | noncoding (99/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 677 total aligned reads displayed.
CTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGG > CP009273/3767598‑3767730 | cTGATGCGGTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAg < 1:13441349/67‑1 (MQ=255)cTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGg < 1:19288261‑M1/68‑2 (MQ=255)cTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTCTTGAATTTGCACGTTCTTGTAGg < 1:14025236‑M1/68‑2 (MQ=255) tGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgg > 1:5259841‑M1/1‑63 (MQ=255) tGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccg < 1:19681229‑M1/67‑5 (MQ=255) tGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccg < 1:2885786‑M1/67‑5 (MQ=255) tGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccg < 1:8641352‑M1/67‑5 (MQ=255) gcgcTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgga > 1:9756892‑M1/1‑62 (MQ=255) aCGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAgg < 1:36362719/68‑1 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgcg < 1:29494521/68‑1 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:18093492/1‑67 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:15504069/1‑67 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:9134337/1‑67 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:32016769/1‑67 (MQ=255) tATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCtt > 1:11988126/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:2601935/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:10046508/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:3672951/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:22026212/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCAGGATAAGGCGCTTAc > 1:16213070/1‑68 (MQ=255) cAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcg < 1:30553121/68‑1 (MQ=255) ggCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgcc > 1:30715538/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:7562899/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:31720207/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:1860364/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:28533270/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:5697597/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccg < 1:3262284/67‑1 (MQ=255) cTACAGGATGCCTCCCAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc < 1:21346859/67‑1 (MQ=255) cTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc < 1:6489452/67‑1 (MQ=255) tACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCAT > 1:11693122‑M2/1‑68 (MQ=255) tACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCA < 1:27425741‑M2/67‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:12126145‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:2265079‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:16703793‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:33111304‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:15143147‑M2/68‑1 (MQ=255) ggATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:11240067‑M2/67‑1 (MQ=255) ggATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:4197073‑M2/67‑1 (MQ=255) gATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:14226725‑M2/68‑1 (MQ=255) atccATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGgc < 1:7268157/64‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccggatgcggcgtaagcgccttatccggc < 1:25609020‑M1/67‑31 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:22452488‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:21155374‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC > 1:6242167‑M2/1‑67 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:10587398‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:24146586‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:24339800‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGG > 1:4605145‑M2/1‑66 (MQ=255) aTCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGc < 1:14705776/68‑1 (MQ=255) aTCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGc < 1:33335622/68‑1 (MQ=255) tCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc < 1:6655452/68‑1 (MQ=255) acaATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc < 1:7947964/68‑1 (MQ=255) aaTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc > 1:37029234/1‑66 (MQ=255) aaTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc > 1:20285942/1‑66 (MQ=255) aaTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctc < 1:35830679/68‑1 (MQ=255) aaTTTGTTGAAATTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctc < 1:17312905/68‑1 (MQ=255) tttGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCtctc < 1:24486958/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:27803014/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:9497902/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:30310633/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:16032634/68‑1 (MQ=255) gttgAATTTGCACGTTCTTGTAGGCCGCATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcctc < 1:20035824/68‑1 (MQ=255) tgAATTTGCACGTTCTTGTCGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCa < 1:350673/67‑1 (MQ=255) tgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCa < 1:1108377/67‑1 (MQ=255) tgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCa < 1:6845789/67‑1 (MQ=255) gAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACg < 1:21672172/68‑1 (MQ=255) gAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACg < 1:23885622/68‑1 (MQ=255) aaTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACgg > 1:34664693/1‑68 (MQ=255) aaTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACgg < 1:4753444/68‑1 (MQ=255) aTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGga < 1:28193816/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:35345281/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:26787286/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:13161171/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:2636138/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:17773510/68‑1 (MQ=255) ccACGTGCTGGTAGGCCGGAAAAGGCGGTTACGCCGCAACCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:8226309/67‑1 (MQ=25) aCGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAggg < 1:29852490/67‑1 (MQ=255) aCGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAggg < 1:17572667/67‑1 (MQ=255) aCGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt < 1:33635194/68‑1 (MQ=255) aCGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt < 1:31224650/68‑1 (MQ=255) aCGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt < 1:12608025/68‑1 (MQ=255) tCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTgg < 1:23331845/68‑1 (MQ=255) tCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTgg > 1:16888675/1‑68 (MQ=255) tCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTgg < 1:547534/68‑1 (MQ=255) tCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTgg < 1:2937945/68‑1 (MQ=255) cTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTggg < 1:8523930/68‑1 (MQ=255) cTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTggg < 1:36050575/68‑1 (MQ=255) gTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGa < 1:25323615/68‑1 (MQ=255) aGgccggatgcggcgtaagcgccttatccggcctacaagcacgtgcaaattcaacaaattgtgatgca > 1:11484775‑M1/1‑2 (MQ=255) aGGCCGGATAATGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:10862290/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATGCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:34254625/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:25008030/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:22903656/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg < 1:2080927/68‑1 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:19006762/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:27117853/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:3873909/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:28965599/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:10204441/1‑68 (MQ=255) | CTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGG > CP009273/3767598‑3767730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |