New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3935250NA (NA)88 (0.230)
+AAGCTGT		 7/98 NT NA noncoding (83/1542 nt) rrsC 16S ribosomal RNA of rrnC operon
?CP009273 = 4028968 NA (NA)noncoding (78/1542 nt) rrsA 16S ribosomal RNA of rrnA operon

ATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGG  >  CP009273/3935195‑3935314
                                                       |                                                                
atagAACGCTGGCGGCAGGCATAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTc                                                        >  1:19234637/4‑66 (MQ=0)
                           atccAAGGCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATg                           <  1:26388302/65‑1 (MQ=0)
                                                    catcTTGATGTTTCGCTGACGAGTGGCGGACGGTTGAGTAATGTCTTGGAAACTGCCTGATGGAgggg  <  1:13840190/65‑1 (MQ=1)
                                                       |                                                                
ATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGG  >  CP009273/3935195‑3935314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.