| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4061067 = | 471 (1.060) | 28 (0.070) | 11/94 | NT | 7.8% | coding (1570/2037 nt) | yihQ | alpha‑glucosidase |
| ? | CP009273 | 4061094 = | 266 (0.710) | coding (1543/2037 nt) | yihQ | alpha‑glucosidase | |||||
Only 100 of 609 total aligned reads displayed.
CAGTTGTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGG > CP009273/4061000‑4061134 | cAGTTGTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCa < 1:14945480/68‑1 (MQ=255) tggcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaa > 1:19978070‑M1/67‑67 (MQ=255) tggcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaa < 1:32550651‑M1/1‑1 (MQ=255) ggcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAgc > 1:26813083‑M1/66‑68 (MQ=255) ggcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAgc > 1:1817546‑M1/66‑68 (MQ=255) ttGTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAgc > 1:4554946/1‑67 (MQ=255) gcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAgc < 1:24595341‑M1/3‑1 (MQ=255) gcaatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAgc < 1:11198452‑M1/3‑1 (MQ=255) tGTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAgc < 1:6728973/66‑1 (MQ=255) aatgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgca > 1:26321163‑M1/63‑68 (MQ=255) atgaccggacatggcctgcaccacagcgacattggcggtttcaccaccctgtttgagatgaAGCgcag > 1:35999428‑M1/62‑68 (MQ=255) atgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgcag > 1:16184389‑M1/62‑68 (MQ=255) tgaccggacatggcctgcaccacagctacattggcggttacaccaccctgtttgagatgaAGCgcagc > 1:34427088‑M1/61‑68 (MQ=255) tgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgcagc > 1:22512780‑M1/61‑68 (MQ=255) tgaccggacatggcctgcaccacagcgacattggcggttacaccaccctgtttgagatgaAGCgcagc > 1:13320167‑M1/61‑68 (MQ=255) cGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGGGAAGGCGCTGAAATCGCACCAGCgcagc < 1:24194863/68‑1 (MQ=255) gCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgcagca < 1:282418/68‑1 (MQ=255) gCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgcagca < 1:18389132/68‑1 (MQ=255) gCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgcagca < 1:9783286/68‑1 (MQ=255) ccAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgcagca > 1:31918762/1‑67 (MQ=255) ccAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgcagca > 1:8736596/1‑67 (MQ=255) ggACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCgcagcagca > 1:2741276/1‑67 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagcagccgc > 1:1396584/1‑67 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagcagcagc < 1:14289607/67‑1 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagcagcagc < 1:31721568/67‑1 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagcagcagc < 1:28555581/67‑1 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCagcagcagc < 1:20576498/67‑1 (MQ=255) aCGGTTACCTTCGTGGGTGCGCATCATCGGCGGGAAGGCGCTGAAATCGCACCAGCGCagcagcagc < 1:5293517/67‑1 (MQ=255) cGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGctc < 1:32739094/68‑1 (MQ=255) ggTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGctct < 1:10750121/68‑1 (MQ=255) aCCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCttt > 1:1670726/1‑66 (MQ=255) ccTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCttt > 1:9173139/1‑65 (MQ=255) ttCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTtgctgc > 1:13565703/1‑68 (MQ=255) ttCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTtgctgc < 1:15812516/68‑1 (MQ=255) tCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTtgctgc > 1:6422494/1‑67 (MQ=255) tCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTtgctgc > 1:340642/1‑67 (MQ=255) tCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTtgctgc > 1:31018114/1‑67 (MQ=255) tCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTgcg < 1:33603494/68‑1 (MQ=255) gTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCt < 1:23837596/68‑1 (MQ=255) tGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCt > 1:30375640/1‑67 (MQ=255) tGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCt > 1:1207588/1‑67 (MQ=255) tGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCt > 1:20887000/1‑67 (MQ=255) gggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTc > 1:17682657/1‑68 (MQ=255) ggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCa > 1:33097018/1‑68 (MQ=255) ggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCa > 1:21774970/1‑68 (MQ=255) ggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCa > 1:27648497/1‑68 (MQ=255) ggTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCa > 1:5646487/1‑68 (MQ=255) ggTGCGCAGCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTc < 1:3928364/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCa > 1:34981751/1‑66 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:4152708/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:36875271/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:19704746/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:16381832/67‑1 (MQ=255) tGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAt < 1:8412738/67‑1 (MQ=255) gcgcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCAtct < 1:20383520/68‑1 (MQ=255) gcATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCa < 1:30664511/68‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:31295626/67‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:17380832/67‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:9503057/67‑1 (MQ=255) atcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCaa < 1:9064337/67‑1 (MQ=255) tcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCacac > 1:7970263/1‑68 (MQ=255) tcatcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAAc < 1:22850501/68‑1 (MQ=255) atcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAg < 1:29639136/68‑1 (MQ=255) atcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAg > 1:2009447/1‑68 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:1253824/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg > 1:35702730/1‑68 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:30832787/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:5044654/68‑1 (MQ=255) tcGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgg < 1:25997946/68‑1 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt > 1:1367280/1‑68 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt > 1:35282203/1‑68 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt > 1:11798285/1‑68 (MQ=255) ggCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggt > 1:36346082/1‑68 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtgg > 1:700842/1‑68 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtgg > 1:25378645/1‑68 (MQ=255) cGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtgg > 1:25157865/1‑68 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAgggggg < 1:7634153/67‑1 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtggt < 1:23486986/68‑1 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtggt < 1:12348529/68‑1 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGggtgg < 1:34724309/67‑1 (MQ=255) gTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGgggggt < 1:27054691/68‑1 (MQ=255) ccaccctgtttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTa < 1:21524492‑M1/49‑1 (MQ=255) ggCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTaa > 1:2808164/1‑67 (MQ=255) ggCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTaa > 1:24775441/1‑67 (MQ=255) gcgcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAAcc > 1:24399599/1‑68 (MQ=255) gcgcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAAcc > 1:6224111/1‑68 (MQ=255) cgcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAAcc < 1:4755245/67‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:10034996/67‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:32922264/67‑1 (MQ=255) gcTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGc < 1:36645119/68‑1 (MQ=255) cctgtttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:15253651‑M1/53‑1 (MQ=255) cctgtttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCg < 1:29156397‑M1/53‑1 (MQ=255) tGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCa < 1:5876626/68‑1 (MQ=255) ttgagatgaAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATg < 1:8855812‑M1/59‑1 (MQ=255) tCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc < 1:23192825/68‑1 (MQ=255) tCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc < 1:21145465/68‑1 (MQ=255) tCGCACCAGCGCAGCAGCAGCGCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc < 1:18839266/68‑1 (MQ=255) cGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTc > 1:19264757/1‑67 (MQ=255) aCCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCt < 1:3380550/67‑1 (MQ=255) ccAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCtgt < 1:22100423/68‑1 (MQ=255) | CAGTTGTCGCCAGGACGGTTACCTTCGTGGGTGCGCATCATCGGCGTGAAGGCGCTGAAATCGCACCAGCGCAGCAGCAGCTCTTTGCTGCGCTTCATCTCAAACAGGGTGGTGTAACCGCCAATGTCGCTGTGG > CP009273/4061000‑4061134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |