| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4382210 | 169 (0.380) | 17 (0.040) | 7/96 | NT | 10.2% | noncoding (34/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382323 | 155 (0.410) | noncoding (35/76 nt) | glyX | tRNA‑Gly | |||||
Only 100 of 257 total aligned reads displayed.
ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCAC > CP009273/4382143‑4382277 | aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:33889686‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:34858628‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:11505154‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:29439957‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:28859139‑M1/68‑1 (MQ=255) gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCaa > 1:30318834/1‑68 (MQ=255) gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCaa > 1:25048414/1‑68 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAgg < 1:5008736/68‑1 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAgg < 1:21909281/68‑1 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAgg < 1:23103560/68‑1 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAgg < 1:35394222/68‑1 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAgg < 1:7509069/68‑1 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAgg < 1:10880862/68‑1 (MQ=255) aaaTTACCTAAGCAAAATTAAGTCGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAgg < 1:26709035/68‑1 (MQ=18) aaaTAACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAgg < 1:24374661/68‑1 (MQ=255) aTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTc < 1:14083662/68‑1 (MQ=255) tACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCgt < 1:29622306/68‑2 (MQ=255) gAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGt < 1:26914025/68‑1 (MQ=255) gAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGt < 1:37027530/68‑1 (MQ=255) aaaGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTc > 1:25883334/1‑68 (MQ=255) aaaGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTc > 1:36273755/1‑68 (MQ=255) aaaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAg < 1:33540593/68‑1 (MQ=255) aaaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAg < 1:18006067/68‑1 (MQ=255) tAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGa > 1:17120542/1‑68 (MQ=255) aaGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg < 1:23599944/68‑1 (MQ=255) agtagtACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGt < 1:23860796/68‑1 (MQ=255) agtagtACGCGGGAATAGCTCAGTTAGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGt < 1:15558981/68‑1 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGCCCGTGgcaaggtggtgcgcgaccaactgcgct > 1:1824574‑M1/1‑41 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCTAg > 1:8851253/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:6346709/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:13636642/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:15379732/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:2412316/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:21478806/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:2014750/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:4754107/1‑66 (MQ=255) cccaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc < 1:7922551/65‑1 (MQ=1) agtaCGCGGGAATAGCTCAGTTGGTAGCGCACTACCTAGCAAAGCTCGGGGTCGGGAGATAGAGgctc > 1:15663670/1‑68 (MQ=9) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:27476957/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:13846435/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:14585756/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:26145441/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:7157595/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:16791764/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:5947379/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:32660575/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:19331347/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:35198977/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:22472679/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:30143324/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:19888901/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:31247775/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct < 1:3606579/67‑1 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct < 1:27760072/67‑1 (MQ=39) ccaCGCGGGAATAGCTCAGGTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCg < 1:5173852/66‑1 (MQ=9) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt > 1:26386721/1‑68 (MQ=33) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt > 1:11609700/1‑68 (MQ=33) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCATGCCAAGCTCGTCGTCGCGAGGTCGAGACTAGtt > 1:17273110/1‑68 (MQ=11) cgGGAATAGCTCAGTTGGTTGAGCACGCCCTTGgcaaggtcgtgctctaccagctgagctattccc > 1:22270443‑M1/1‑33 (MQ=255) tCAGTTGGTAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtgg > 1:32844540‑M1/1‑23 (MQ=255) ttgagcaCGACCTTGgcaaggtcgtgctgtagcaactgagctagtaccgcttgggtggtctgtggttt > 1:28082778‑M1/3‑15 (MQ=255) tggagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:29253994/3‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGcaaa > 1:32093138/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGatag > 1:32558875/1‑65 (MQ=1) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa < 1:12846846/67‑1 (MQ=31) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAg > 1:33828556/1‑68 (MQ=33) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt > 1:17931240/1‑68 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:1133740/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:7460368/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:18786589/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:19687702/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:16267350/66‑1 (MQ=35) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAACAGtgctg > 1:1045226/1‑68 (MQ=25) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAATtggtt > 1:9812122/1‑65 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctg > 1:8163595/1‑68 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgct < 1:1117679/67‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgct < 1:12037867/67‑1 (MQ=40) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:27203178/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:6822880/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:4200958/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:18125933/68‑1 (MQ=255) gACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcact < 1:9514257‑M1/68‑62 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTGCAAAATTTGAAAAGTGCAGCaa > 1:16720033/1‑68 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaa > 1:16901478/1‑68 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcacttt > 1:1330722‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgt < 1:5361831‑M1/53‑49 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccccttgggtggtctgtgatttgcaggacttt > 1:4604901‑M1/1‑5 (MQ=255) cTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcactttt < 1:22748206‑M1/68‑65 (MQ=255) cTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgatttgtaggacttt > 1:3503222‑M1/1‑4 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg < 1:19543323/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg < 1:29743758/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:3404704/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:2075402/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:21102048/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:6908126/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:14958521/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:10133539/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:34455693/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCAAAAATTTGAAAAGTGCTGCAAAGc < 1:32158133/68‑1 (MQ=255) ttGCCAAGGGCGGGGTCGCGAGTTCGAGACTCGTTTCCAGCTCCATAATTTGAAAAGTGCTGCAAAGc < 1:15115353/68‑1 (MQ=17) | ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCAC > CP009273/4382143‑4382277 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |