New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 248296 =145 (0.330)11 (0.030) 6/96 NT 7.2% coding (912/1056 nt) dinB DNA polymerase IV
?CP009273 248360 = 159 (0.420)coding (976/1056 nt) dinB DNA polymerase IV

Only 100 of 278 total aligned reads displayed.

TGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGC  >  CP009273/248229‑248363
                                                                   |                                                                   
tGAATGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGG                                                                     <  1:9362408‑M1/68‑1 (MQ=255)
 gATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGG                                                                     >  1:5827147‑M1/1‑67 (MQ=255)
  aTTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCC                                                                   >  1:13993303‑M1/1‑68 (MQ=255)
    tGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGC                                                                 >  1:8595272‑M1/1‑68 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCG                                                                >  1:1499656‑M1/1‑68 (MQ=255)
     gCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCG                                                                <  1:23067250‑M1/68‑1 (MQ=255)
      cTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCG                                                                >  1:8938577‑M1/1‑67 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                              <  1:19178877‑M1/8‑1 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                              <  1:20806613‑M1/8‑1 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                              <  1:20882599‑M1/8‑1 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                              <  1:13498981‑M1/8‑1 (MQ=255)
       tctttccatttgcgggtcaagcaacgtcacatgcagccccaccagacgcacaccgcgccaGCCGCGGc                                                              <  1:11531385‑M1/8‑1 (MQ=255)
       tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGC                                                              <  1:23342248‑M1/68‑1 (MQ=255)
       tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGC                                                              <  1:34848391‑M1/68‑1 (MQ=255)
       tCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGC                                                              <  1:32511138‑M1/68‑1 (MQ=255)
        ctttccatttgcgggtcaagcaacgtcacattcagccccaccagacgcacaccgcgcccGCCGCGGc                                                              >  1:13818223‑M1/60‑67 (MQ=255)
        ctttccatttgcgggtcaagaaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                              >  1:36194617‑M1/60‑67 (MQ=255)
        ctttccatttgcggggcaagcaacgtcacatgcagccccaccagacgcacaccgcgcccGCCGCGGc                                                              >  1:22175459‑M1/60‑67 (MQ=255)
          ccAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                           >  1:35662318/1‑68 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                           <  1:32443994/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                           <  1:3167572/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                           <  1:30886513/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                           <  1:1797677/67‑1 (MQ=255)
           cAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGa                                                           <  1:8229494/67‑1 (MQ=255)
            aGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAAt                                                         >  1:15254747/1‑68 (MQ=255)
             gggggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATa                                                        >  1:2280865/1‑68 (MQ=255)
                ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                      <  1:14430337/67‑1 (MQ=255)
                ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                      <  1:32748364/67‑1 (MQ=255)
                ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                      <  1:29107356/67‑1 (MQ=255)
                ggTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATaaa                                                      <  1:25840909/67‑1 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                 <  1:10882755/67‑1 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGAt                                                <  1:28386172/68‑1 (MQ=255)
                     aaTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGAt                                                <  1:34298725/68‑1 (MQ=255)
                      aTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                 >  1:19015176/1‑66 (MQ=255)
                      aTTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGa                                                 >  1:17938892/1‑66 (MQ=255)
                       ttAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCt                                              >  1:24669765/1‑68 (MQ=255)
                       ttAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCt                                              >  1:36954020/1‑68 (MQ=255)
                         aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa                                            <  1:22254560/68‑1 (MQ=255)
                         aaaGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTaa                                            <  1:7361820/68‑1 (MQ=255)
                           aGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                          <  1:25505406/68‑1 (MQ=255)
                            gTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATc                                          >  1:3118467/1‑67 (MQ=255)
                             ttCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCg                                         >  1:33246326/1‑67 (MQ=255)
                              tCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGcc                                       <  1:36563590/68‑1 (MQ=255)
                              tCGACGATTTTCAGCAAACCACCCAGGAGCACGACTGGCCGCGGCTGAATAAAGCTGATCTAATAGcc                                       >  1:12383728/1‑68 (MQ=255)
                                   gaTTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgc                                  >  1:11021507/1‑68 (MQ=255)
                                     ttttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgc                                <  1:2244878/68‑1 (MQ=255)
                                     atgcagccccaccagacgcacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgc                                <  1:21144867‑M1/38‑1 (MQ=255)
                                      tttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgcg                               <  1:10145621/68‑1 (MQ=255)
                                      tttCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACcgcgcg                               <  1:21746726/68‑1 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGGggtgctcccaggttttacgcgcggtggcgattaga                           >  1:9846646‑M1/1‑32 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                           >  1:10508201/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                           >  1:9570085/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                           >  1:33544480/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                           >  1:3414453/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                           >  1:6371617/1‑67 (MQ=255)
                                           gCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaa                           >  1:13211231/1‑67 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTTGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                          <  1:36080196/66‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                          <  1:35323739/66‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                          <  1:6816253/66‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTaaaa                          <  1:28627905/66‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAc                         <  1:28554606/67‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAc                         <  1:33667337/67‑1 (MQ=255)
                                             aaaCCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAAc                         <  1:31610878/67‑1 (MQ=255)
                                                ccaccCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTgg                     >  1:2418896/1‑68 (MQ=255)
                                                  accCAGGAGCACGTCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagcttt                   >  1:3739861‑M1/1‑25 (MQ=255)
                                                  accCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGa                   >  1:32114780/1‑68 (MQ=255)
                                                  accCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGa                   <  1:19429077/68‑1 (MQ=255)
                                                     cAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGa                >  1:7749822/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagcttttttca              >  1:28804475‑M1/1‑20 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc              >  1:30400679/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc              >  1:5429627/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc              >  1:5027661/1‑68 (MQ=255)
                                                       ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc              >  1:24830336/1‑68 (MQ=255)
                                                       cacaccgcgcccGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGAtgacc              <  1:2721950‑M1/56‑3 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcag             >  1:11843699‑M1/1‑18 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcag             >  1:19913626‑M1/1‑18 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCgttcatcccagggtttacgcgccgtggggatttgatcaggtttattcag             >  1:16720005‑M1/1‑18 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATTAACg             <  1:27627397‑M2/67‑2 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg             <  1:30268776‑M2/67‑2 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg             <  1:15831931‑M2/67‑2 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg             <  1:36880640‑M2/67‑2 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg             <  1:27913920‑M2/67‑2 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg             >  1:29587659‑M2/1‑66 (MQ=255)
                                                         aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg             <  1:1865790‑M2/67‑2 (MQ=255)
                                                          gCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgcc           <  1:12147506‑M2/68‑4 (MQ=255)
                                                          accgcgcccGCCGCGGCTGAATAAAGCGGCTCTAATCGCCACCGCGCGTAAAACCTGGGATGAAcgcc           <  1:30800006‑M1/59‑1 (MQ=255)
                                                            aCGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgc         <  1:7548670‑M2/68‑6 (MQ=255)
                                                            aCGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgcc           >  1:1708836‑M2/1‑63 (MQ=255)
                                                             cGTCTGGCCGCGGCGGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcg        >  1:26328055‑M2/1‑62 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg       >  1:26944775‑M2/1‑61 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg       >  1:7000714‑M2/1‑61 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg       >  1:22615912‑M2/1‑61 (MQ=255)
                                                              gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcg        <  1:21251115‑M2/67‑7 (MQ=255)
                                                               tCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattccgccgcgg       >  1:4420520‑M1/1‑12 (MQ=255)
                                                               tCTGGCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcgg       >  1:33358321‑M1/1‑12 (MQ=255)
                                                               tCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggc      <  1:20125560‑M2/68‑9 (MQ=255)
                                                               tCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggc      <  1:35834439‑M2/68‑9 (MQ=255)
                                                                  ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACGTGGGATGAACGCCGcggcgg    >  1:20597487/1‑67 (MQ=255)
                                                                  ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg   <  1:34663728/68‑1 (MQ=255)
                                                                   gCCGCGGCgttcatcccaggttttacgcgcggtggcgattagatcagctttattcagccgcggccaga  <  1:9284742‑M1/68‑61 (MQ=255)
                                                                   |                                                                   
TGATTGCTCGCCAGGGGGTGAAATTAAAGTTCGACGATTTTCAGCAAACCACCCAGGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGC  >  CP009273/248229‑248363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.