| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 603521 | 8 (0.020) | 4 (0.010) | 3/94 | NT | 37.3% | coding (1/1113 nt) | insL1 | IS186 transposase |
| ? | CP009273 | = 603589 | NA (NA) | coding (69/1113 nt) | insL1 | IS186 transposase | |||||
Only 100 of 258 total aligned reads displayed.
GGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATA > CP009273/603454‑603587 | ggggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA > 1:970469‑M1/1‑68 (MQ=255)ggggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA > 1:27387737‑M1/1‑68 (MQ=255)ggggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA > 1:2896752‑M1/1‑68 (MQ=255)ggggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA > 1:33283983‑M1/1‑68 (MQ=255)ggggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA < 1:18220584‑M1/68‑1 (MQ=255)ggggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA > 1:5332603‑M1/1‑68 (MQ=255)ggggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA > 1:7446778‑M1/1‑68 (MQ=255)ggggAGTAATCCCATAAGCGCTAACCTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA > 1:23688523‑M1/1‑68 (MQ=255) gAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa > 1:28424468/1‑68 (MQ=40) gAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa > 1:31386074/1‑68 (MQ=40) gAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa > 1:9407273/1‑68 (MQ=40) gAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa > 1:18191630/1‑68 (MQ=40) ataaaTCCCATAAGCGCTAACTTACGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:19837646/64‑1 (MQ=0) aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:2573631/67‑1 (MQ=39) aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:28170667/67‑1 (MQ=39) aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:30204534/67‑1 (MQ=39) aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:30932476/67‑1 (MQ=39) aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:35868119/67‑1 (MQ=39) aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:4618727/67‑1 (MQ=39) aGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa < 1:14793151/67‑1 (MQ=39) aTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt > 1:11059921/1‑66 (MQ=31) aTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt > 1:7937621/1‑66 (MQ=31) aTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAtt > 1:8398637/1‑66 (MQ=31) aTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc < 1:35103258/68‑1 (MQ=31) aaGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAagtatccagttcttcgggcttaccaat < 1:26678110‑M1/68‑28 (MQ=255) aaGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGAagtatccagttcttcgggcttaccaat < 1:16323113‑M1/68‑28 (MQ=255) tatGATTTAACGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagt < 1:22870824‑M1/68‑51 (MQ=255) aCGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgag > 1:4237619‑M1/1‑9 (MQ=255) cGTGCCGTagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:34351719‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:26982299‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:10520126‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:27573779‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:5753333‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:28752820‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:6465674‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:29492372‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:30000894‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:429902‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:32006020‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:32567838‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:37005370‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:33503379‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:33815566‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:36193656‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:35515210‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:25427036‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:15762740‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:1719533‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:17736622‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:14112985‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:13453565‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:1862945‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:19199733‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:19359841‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:19437229‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:20830324‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:12036890‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:2135246‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:21800546‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:22104082‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga > 1:25134144‑M1/1‑8 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:11252661‑M1/68‑61 (MQ=255) cGTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:11849439‑M1/68‑61 (MQ=255) cGTGCAGAagtatccagttcttcgggcttaccaatattggccagaattgctgaccagttatagtgata > 1:23191399‑M1/1‑8 (MQ=255) agtGCCGAagtatccagttcttcgtgcttaccaatatgggccagaattgctgaccagttatcgtgaga < 1:35222433‑M1/67‑61 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccattatgggccagaagtgctgcccagtgatcgtgagag > 1:24116920‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgtgag > 1:4491480‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:31031990‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:17950081‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:34777830‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:24472624‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:8618848‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:24293098‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:12898706‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:22734052‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:32317638‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:805901‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:3819995‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagag > 1:20186802‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgggagag > 1:22253615‑M1/1‑7 (MQ=255) gTGCCGAagtatccagttcttcgggcttaccaata > 1:16821482‑M1/1‑7 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagta < 1:21553772‑M1/68‑64 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagta > 1:6749727‑M1/1‑5 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:15273110‑M1/67‑63 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:25581972‑M1/67‑63 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:35007707‑M1/67‑63 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:31924025‑M1/67‑63 (MQ=255) gCCGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagt < 1:26855088‑M1/67‑63 (MQ=255) ccGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaa > 1:25950667‑M1/1‑4 (MQ=255) ccGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaa > 1:10057626‑M1/1‑4 (MQ=255) cGAagtatccagttcttcgggcttaccaatatggtccagaattgctgaccagttatcgtgagagtaat < 1:34054918‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:17594333‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:17978123‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:13978620‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:6187396‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:18847869‑M1/68‑66 (MQ=255) cGAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat < 1:27780168‑M1/68‑66 (MQ=255) gAagtttccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaatt < 1:12656737‑M1/68‑67 (MQ=255) gAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaatt < 1:24031519‑M1/68‑67 (MQ=255) gAagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaat > 1:30366017‑M1/1‑2 (MQ=255) | GGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATA > CP009273/603454‑603587 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |