| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 777093 | 113 (0.250) | 62 (0.160) +TTTGAGT |
3/98 | NT | 38.5% | noncoding (61/76 nt) | lysQ | tRNA‑Lys |
| ? | CP009273 | = 2514886 | NA (NA) | noncoding (614/1345 nt) | IS186 | repeat region | |||||
Only 100 of 237 total aligned reads displayed.
GCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGA > CP009273/777028‑777160 | gCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:18738429/68‑1 (MQ=39)cgaaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:11122018/66‑1 (MQ=25)cgaaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:22868634/66‑1 (MQ=25) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:34490407/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:28695784/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:28139260/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:34323874/1‑68 (MQ=35) aGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:23019946/1‑67 (MQ=33) aGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:35554790/1‑67 (MQ=33) aGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:33541678/1‑67 (MQ=33) ttGGGCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCt < 1:4709294/68‑1 (MQ=25) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAAAAGCGACCTAGAGGGGCTGGTTTGCTa > 1:7736690/1‑68 (MQ=11) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTa > 1:31102259/1‑68 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:28796204/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:9382295/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:10556970/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:31445442/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:3053912/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:20926217/68‑1 (MQ=35) ggTCGCAGGGTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:35606532/68‑1 (MQ=25) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:26786932/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:2157219/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:20037714/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:10936097/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:36866414/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:13613439/67‑1 (MQ=35) gCATGTTCGAATCCTGCACGACCCTCCAATTTAAAAAAGCCCCCTAAAGGCGCTTTTTTGCTATCTGc < 1:25215239/68‑1 (MQ=11) gCAGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtg > 1:26128425‑M1/1‑13 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc < 1:25292788/68‑1 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc > 1:9358064/1‑68 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc < 1:23990162/68‑1 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc < 1:23698011/68‑1 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc < 1:19841304/68‑1 (MQ=35) cAGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgg > 1:16635316‑M1/1‑12 (MQ=255) cAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCg > 1:32735201/1‑68 (MQ=35) aGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtggg > 1:3844680‑M1/1‑11 (MQ=255) aGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtggg > 1:29529724‑M1/1‑11 (MQ=255) aGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgg < 1:33089484‑M1/67‑57 (MQ=255) aGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgg < 1:27987631‑M1/67‑57 (MQ=255) aGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgg < 1:32344053‑M1/67‑57 (MQ=255) ggTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtggg > 1:8537261‑M1/1‑10 (MQ=255) gTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt > 1:17973766/1‑67 (MQ=35) ttCGAATCtttgagtatcgctgatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:16324612‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcatatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:20418039‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcg > 1:2066355‑M1/1‑8 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:1902745‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:21835438‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:11780841‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:33707649‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:2731852‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:6605839‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:27131989‑M1/66‑59 (MQ=255) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:31197946/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:1601056/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:20296851/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATa < 1:27689210/67‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATa < 1:28383999/67‑1 (MQ=35) tctaatcttttagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:18346764‑M1/65‑62 (MQ=255) tctaatatttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:21030546‑M1/65‑62 (MQ=255) tCGAATCtttgagtatcgcagttagcaaaaatgctcctttagggcgcttttttacattggtgggtcgt < 1:2446121‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:3529345‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:11610957‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:2383664‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:14527104‑M1/68‑62 (MQ=255) tCGAATCtttgagaatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:18015372‑M1/68‑62 (MQ=255) tCGAATCCTGCAGGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACt < 1:35935232/68‑1 (MQ=25) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:5611977/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:5475799/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:36441859/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:9853277/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:30301359/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:29269068/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:12215766/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:15607836/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:16178055/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:245785/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:19298/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:21300910/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACt < 1:29691602/68‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACt < 1:13090173/68‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACt < 1:185035/68‑1 (MQ=35) cGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtg < 1:27455406‑M1/68‑63 (MQ=255) cGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt > 1:1499717‑M1/1‑6 (MQ=255) cGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt > 1:7652315‑M1/1‑6 (MQ=255) cGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTc < 1:5337771/68‑1 (MQ=35) gAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCa < 1:16831906/68‑1 (MQ=35) agctttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcag > 1:36137840‑M1/3‑3 (MQ=255) aTCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcag > 1:37110087‑M1/1‑3 (MQ=255) aTCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcag > 1:26321543‑M1/1‑3 (MQ=255) aTCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcag > 1:18549872‑M1/1‑3 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg < 1:17641143‑M1/68‑67 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg < 1:25664258‑M1/68‑67 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg > 1:15353370‑M1/1‑2 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg < 1:23560302‑M1/68‑67 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg > 1:27538539‑M1/1‑2 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg > 1:12945144‑M1/1‑2 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg < 1:9632342‑M1/68‑67 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg < 1:27945626‑M1/68‑67 (MQ=255) ctttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagga < 1:13447985‑M1/68‑68 (MQ=255) ctttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagga < 1:9517004‑M1/68‑68 (MQ=255) | GCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGA > CP009273/777028‑777160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |