| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 921364 = | 49 (0.110) | 18 (0.050) | 10/100 | NT | 29.1% | noncoding (64/88 nt) | serW | tRNA‑Ser |
| ? | CP009273 | 1092768 = | NA (NA) | intergenic (+483/+253) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
Only 100 of 284 total aligned reads displayed.
CGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT > CP009273/921297‑921431 | gcgaaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:3407411/65‑1 (MQ=255)gaaaaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:15351366/66‑1 (MQ=255)aagaatacctcgtacgaaagtacgggctttttttttcgtatattgcacacaccggggggatgagaagc > 1:14944164‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:36041179‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:24046093‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:29584966‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:15784954‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:17328565‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:33198598‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:7858930‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:21205838‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:20783359‑M1/68‑68 (MQ=255) gAAAAAAATGCTCGCACTTTCGTACCAGCTCTTCTTTAAATATGGCGGTGAGTGGGGGATTCGAAccc < 1:8266902/68‑1 (MQ=14) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:22682591/68‑1 (MQ=40) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:36940294/68‑1 (MQ=40) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:3733620/68‑1 (MQ=40) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:29728678/68‑1 (MQ=40) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:7972047/68‑1 (MQ=40) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:9626746/67‑1 (MQ=40) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:8916926/67‑1 (MQ=40) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:20691443/68‑1 (MQ=255) aagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:23030677‑M1/67‑68 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc < 1:27802155‑M1/2‑1 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc < 1:14329633‑M1/2‑1 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc < 1:21966782‑M1/2‑1 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc < 1:19587208‑M1/2‑1 (MQ=255) aaaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:36452527/68‑1 (MQ=40) gaagagctcgtacgaaagtacgggcttttttttcgtttattgcacacaccggggggatgagaagcccc < 1:10375357‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatatttcacacaccggggggatgagaagcccc < 1:18501731‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccgggtggaggagaagcccc < 1:496263‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccgggggtatgagaagcccc < 1:8597979‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggctgagaagcccc < 1:16939082‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgcgaagccca < 1:34323159‑M1/4‑2 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:32043849‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:35821615‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:26841406‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:33445151‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:27095100‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:14099812‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:2761342‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:11691861‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:31274889‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:28245915‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:2834824‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:30000819‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:14635138‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:16159374‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:13024432‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:4057064‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:4553809‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:17362677‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:4846780‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:17783561‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:21918786‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:5660116‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:693586‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:8491208‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:9400960‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:20421356‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggaggagaagccca < 1:20321170‑M1/4‑2 (MQ=255) aaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccccc < 1:10077466/68‑1 (MQ=40) aaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:20999534/67‑1 (MQ=40) aaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:30177166/67‑1 (MQ=40) aaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:21155736/67‑1 (MQ=40) gaagagctcgtacgaaagtacgggctttttttcgtatatttcacacaccggggggaacacaagCCCCg < 1:1165546‑M1/5‑1 (MQ=255) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagctg < 1:21286690‑M1/3‑3 (MQ=255) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg < 1:6694989‑M1/5‑1 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:28596705‑M1/63‑67 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGa > 1:1883924‑M1/63‑68 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGa > 1:6072647‑M1/63‑68 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGa > 1:19296687‑M1/63‑68 (MQ=255) aaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt > 1:23250473/1‑68 (MQ=40) aaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt < 1:9254995/68‑1 (MQ=40) aaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc < 1:11479011/68‑1 (MQ=40) aaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAGTCGAACCCCCGATAc < 1:26962143/68‑1 (MQ=255) aGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACg > 1:30293382/1‑68 (MQ=40) tCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt < 1:24910286/67‑1 (MQ=37) tCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt < 1:13311600/67‑1 (MQ=37) tCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGt < 1:26142710/66‑1 (MQ=37) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:3541297/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:24568294/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:123696/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:10622197/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:30799158/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:23617097/68‑1 (MQ=25) cGCACATTCGTACGAGCTCTTCTTTAAATATGGCGGCGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:2914570/68‑1 (MQ=255) gCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:3308218/67‑1 (MQ=33) acgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGc > 1:22960260‑M1/54‑67 (MQ=255) acgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGc > 1:10964563‑M1/54‑67 (MQ=255) acgaaagcacgggcttttttttcgtaacttgcccaccccggggggatgagaagCCCCGATACGTTGc > 1:28063913‑M1/54‑67 (MQ=255) cgaaagtacgggcttttttttcgtatattgcacacaccggggggatgcgaagCCCCGATACGTTGCCg > 1:11387050‑M1/53‑68 (MQ=255) tattgcccccaccggggggatgacaagCCCCGTTACGTTGCCGTTAACACACTTTCCAGGCGTGCTcc > 1:23374511‑M1/28‑68 (MQ=255) gggatgagaagCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGac < 1:35325549‑M1/56‑1 (MQ=255) CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACcaaaa < 1:16853935‑M1/68‑2 (MQ=255) CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAt < 1:1823086‑M1/68‑1 (MQ=255) CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAt > 1:20203729‑M1/1‑68 (MQ=255) CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAt < 1:713878‑M1/68‑1 (MQ=255) CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAt < 1:6258676‑M1/68‑1 (MQ=255) CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAt < 1:36606093‑M1/68‑1 (MQ=255) CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAt < 1:27376187‑M1/68‑1 (MQ=255) | CGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT > CP009273/921297‑921431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |