| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1282050 = | NA (NA) | 7 (0.020) | 3/98 | NT | NA | noncoding (1/72 nt) | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 1282075 = | NA (NA) | noncoding (26/72 nt) | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 1950 total aligned reads displayed.
GCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATC > CP009273/1281983‑1282117 | gCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTg > 1:29813092/1‑68 (MQ=255) gAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGt < 1:22603273/67‑1 (MQ=255) ctccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTCGGa > 1:10916727‑M1/63‑68 (MQ=255) ctccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTCGGa < 1:3668561‑M1/6‑1 (MQ=255) ctccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTCGGa > 1:6884836‑M1/63‑68 (MQ=255) ctccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTCGGa > 1:20800511‑M1/63‑68 (MQ=255) tccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTCGGAt < 1:3326895‑M1/7‑1 (MQ=255) tccgagctaattttgcccgatggcaccacgtttaccgggcctacaatatcctcccctgtagGTCGGAt < 1:24981377‑M1/7‑1 (MQ=255) aGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATgcg < 1:25552415/68‑1 (MQ=255) aGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATgcg < 1:20506787/68‑1 (MQ=255) aGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGAAgc > 1:16845348/1‑67 (MQ=255) ttCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGcgct > 1:13413979/1‑68 (MQ=255) tCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGcgctt > 1:9341695/1‑68 (MQ=255) tCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGcgct > 1:35282371/1‑67 (MQ=255) cacaTAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGcgcttc < 1:2194562/68‑1 (MQ=255) aTAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGcgcttcgct > 1:5758628/1‑68 (MQ=255) aGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTa < 1:15572736/68‑1 (MQ=255) aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGCTGCGCTTCGCTTAt > 1:37046101/1‑67 (MQ=255) aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTAt > 1:14207890/1‑67 (MQ=255) aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTAt > 1:11656341/1‑67 (MQ=255) aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTAt > 1:12437738/1‑67 (MQ=255) aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTAt > 1:19410448/1‑67 (MQ=255) aCCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCCGATGCGCTTCGCTTAt > 1:31204532/1‑67 (MQ=255) ctcTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATcc > 1:20059605/3‑68 (MQ=255) cccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATcc > 1:8754229/1‑68 (MQ=255) cccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATcc > 1:7750964/1‑68 (MQ=255) cccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATcc > 1:36258353/1‑68 (MQ=255) ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCg > 1:26177119/1‑68 (MQ=255) ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCg > 1:6613062/1‑68 (MQ=255) ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCg > 1:2149353/1‑68 (MQ=255) ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCg > 1:13882205/1‑68 (MQ=255) ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCg > 1:328565/1‑68 (MQ=255) ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCg > 1:34712784/1‑68 (MQ=255) ccTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCg > 1:8084747/1‑68 (MQ=255) cTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGa < 1:4888614/68‑1 (MQ=255) gCTTCGGCGGGG‑TTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt < 1:228723/68‑1 (MQ=255) cTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt > 1:10617773/1‑68 (MQ=255) ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt < 1:29154530/67‑1 (MQ=255) ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt < 1:4645828/67‑1 (MQ=255) ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt < 1:14488595/67‑1 (MQ=255) ttCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCt < 1:15224223/67‑1 (MQ=255) tCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTAc > 1:35027171/1‑68 (MQ=255) tCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTAc < 1:30426360/68‑1 (MQ=255) tCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTAc < 1:8342242/68‑1 (MQ=255) tCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTAc < 1:27241467/68‑1 (MQ=255) tCGGCGGGGTTTTTTTATGGGCACGGGGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTAc < 1:393828/68‑1 (MQ=255) cggcggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACa < 1:25892817/68‑1 (MQ=255) cggcggGGTTTTTTTATGGGCACGGTGCGGGGGGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACa < 1:15958269/68‑1 (MQ=255) ggcggGG‑TTTTTTATGGGCACGGGGCGGGGTGTGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgg < 1:5354924/68‑1 (MQ=37) cggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgg < 1:6087718/67‑1 (MQ=255) cggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgg < 1:14913467/67‑1 (MQ=255) cggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgg < 1:3562794/67‑1 (MQ=255) cggGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgg < 1:27475945/67‑1 (MQ=255) ggggTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgggg < 1:28303868/68‑1 (MQ=255) ggggTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAgggg < 1:30783903/68‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:32557801/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:10004303/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:9694227/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:17122713/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:17489605/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:18449510/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:23443008/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:23099686/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:21739575/67‑1 (MQ=255) tttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGggagg < 1:7304302/67‑1 (MQ=255) ttttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGat < 1:2379110/68‑1 (MQ=255) ttttttATGGCCACCGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTGATCCGACCTACAGGGGAGTat < 1:6378975/68‑1 (MQ=37) ttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGatat < 1:898329/68‑1 (MQ=255) ttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGatat < 1:24679967/68‑1 (MQ=255) ttttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGatat < 1:31812718/68‑1 (MQ=255) tttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATAtt < 1:27957205/68‑1 (MQ=255) tttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATAtt < 1:3600646/68‑1 (MQ=255) tttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATAtt < 1:34361266/68‑1 (MQ=255) tttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATAtt < 1:31469626/68‑1 (MQ=255) tttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATAtt < 1:27691982/68‑1 (MQ=255) ttATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTg < 1:18181326/68‑1 (MQ=255) tGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAg > 1:28736994/1‑68 (MQ=255) ggCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGACGATATTGTAgg > 1:25308041/1‑67 (MQ=255) aCGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCg < 1:18924830/68‑1 (MQ=255) aCGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCg < 1:26896530/68‑1 (MQ=255) aCGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCg < 1:2951572/68‑1 (MQ=255) cggggcggggTGAGTGGGCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCgg < 1:10227846/68‑1 (MQ=37) cGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCgg < 1:13065786/68‑1 (MQ=255) cGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCgg < 1:17808398/68‑1 (MQ=255) cGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCgg < 1:18672024/68‑1 (MQ=255) gCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTaa > 1:11322904/1‑67 (MQ=255) ggTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtg > 1:4430266/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:26614474/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:24084480/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:22322269/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:21216188/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:197340/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:30091990/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:32151350/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:16477660/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:16235784/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:12100622/1‑68 (MQ=255) gTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACgtgg > 1:33972136/1‑68 (MQ=255) gTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGcc > 1:24310197/1‑68 (MQ=255) GTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATc < 1:33611745‑M1/68‑1 (MQ=255) | GCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACGGTGCGGGGTGAGTTGTCGGATGCGCTTCGCTTATCCGACCTACAGGGGAGGATATTGTAGGCCCGGTAAACGTGGTGCCATC > CP009273/1281983‑1282117 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |