| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1874094 | 421 (0.950) | 102 (0.240) | 29/106 | NT | 20.4% | coding (112/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | CP009273 | = 2509092 | NA (NA) | intergenic (+170/+30) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase | |||||
Only 100 of 768 total aligned reads displayed.
TGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAA > CP009273/1874028‑1874160 | gtTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataa > 1:7990325‑M1/1‑64 (MQ=255) gtTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCgg > 1:19750023/1‑67 (MQ=255) tcatcaGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGgc > 1:5881352/1‑67 (MQ=255) tcatcaGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGgc < 1:8667295/67‑1 (MQ=255) tcaGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTACACCCCCGGGCGCGt > 1:19065373/1‑68 (MQ=255) tcaGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgct > 1:10784446‑M1/1‑59 (MQ=255) tcaGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgct > 1:28804148‑M1/1‑59 (MQ=255) tcaGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGt > 1:26557871/1‑68 (MQ=255) tcaGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGt > 1:11593691/1‑68 (MQ=255) tcaGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGt > 1:22723554/1‑68 (MQ=255) tcaGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGt > 1:28309539/1‑68 (MQ=255) tcaGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGt > 1:9276807/1‑68 (MQ=255) tcaGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGt > 1:18583299/1‑68 (MQ=255) tcaGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGt > 1:16891514/1‑68 (MQ=255) tcaGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGt > 1:7757759/1‑68 (MQ=255) tcaGCGTAGCCGAGATAATTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgct > 1:12057800‑M1/1‑59 (MQ=255) aGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGtt > 1:30812925/1‑67 (MQ=255) aGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGtt > 1:14679202/1‑67 (MQ=255) aGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGtt > 1:14158712/1‑67 (MQ=255) aGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCACGGGCGCGtt > 1:26293010/1‑67 (MQ=255) aGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCACataagcgcta > 1:13762894‑M1/1‑57 (MQ=255) aatcatatcaggcgtaataccacaacccttaagttagcgcttatgGGGTAAACCCCCGGGCGCGTTcc > 1:33492819‑M1/46‑68 (MQ=255) tcatatcaggcgtaataccacaacccttaagttagcgcttatgGGGTAAACCCCCGGGCGCGTTCCtt < 1:20181480‑M1/25‑1 (MQ=255) gTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGTCGTGGGTAAACCCCCGGGCGCGTTcc < 1:23174133/66‑1 (MQ=255) gTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgctaact < 1:14873040‑M1/67‑14 (MQ=255) gTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgctaact < 1:23830327‑M1/67‑14 (MQ=255) gTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgctaa < 1:178206‑M1/65‑12 (MQ=255) gTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTcc < 1:16087983/66‑1 (MQ=255) gTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTcc < 1:31762866/66‑1 (MQ=255) gTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTcc < 1:18251432/66‑1 (MQ=255) gTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTcc < 1:6645730/66‑1 (MQ=255) gTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCtt < 1:4639848/68‑1 (MQ=255) gTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCtt < 1:37118679/68‑1 (MQ=255) gTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCtt > 1:7610464/1‑68 (MQ=255) cGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgctaacttaagg < 1:33103745‑M1/67‑19 (MQ=255) cGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTAt < 1:30994274/66‑1 (MQ=255) caggcgtaataccacaacccttaagttagcgcttatgGGGTAAACCCCCGGGCGCGTTCCTTTATCaa < 1:10381639‑M1/31‑1 (MQ=255) gcgtaataccacaacccttaagttagcgcttatgGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGAt < 1:31958023‑M1/34‑1 (MQ=255) tatTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgctaacttaagggttga > 1:12525275‑M1/1‑44 (MQ=255) tatTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATg > 1:22498085/1‑68 (MQ=255) ttGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgctaacttaagggttgaacca < 1:1450528‑M1/68‑28 (MQ=255) aataccacaacccttaagttagcgcttatgGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACg > 1:29084305‑M1/31‑68 (MQ=255) aataccacaacccttaagttagcgcttatgGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACg > 1:32354595‑M1/31‑68 (MQ=255) taccacaacccttaagttagcgcttatgGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGt < 1:36802218‑M1/39‑1 (MQ=255) taccacaacccttaagttagcgcttatgGGGTAAACCCCCGGGCGCGTTACTTTATCAAGATGACGt < 1:30306487‑M1/39‑1 (MQ=255) gACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgctaacttaagggttgaaccatc < 1:5451872‑M1/68‑30 (MQ=255) aCCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgctaacttaagggttgaacca > 1:6355234‑M1/1‑38 (MQ=255) aCCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgctaacttaagggttgaacca > 1:11308073‑M1/1‑38 (MQ=255) aCCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTc > 1:34512623/1‑68 (MQ=255) aCCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTc > 1:36520725/1‑68 (MQ=255) aCCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTc > 1:10099221/1‑68 (MQ=255) acaacccttaagttagcgcttatgGGGTAAACCCCCGGGCGCGTTACTTTATCAAGATGACGTTCGaa < 1:10993315‑M1/44‑1 (MQ=255) cccATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAg < 1:3002928/54‑1 (MQ=255) ccATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTGCGAatat < 1:4920991/68‑1 (MQ=255) gCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCg > 1:12794931/1‑68 (MQ=255) gCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCg > 1:33594490/1‑68 (MQ=255) cATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATTACGTTCGAATATTCCg > 1:29600578/1‑67 (MQ=255) cATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCg > 1:31475208/1‑67 (MQ=255) cATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCg > 1:33959027/1‑67 (MQ=255) cATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCg > 1:9614342/1‑67 (MQ=255) cATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCg > 1:21390895/1‑67 (MQ=255) cATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCg > 1:17156001/1‑67 (MQ=255) cATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCg > 1:1557910/1‑67 (MQ=255) cATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCg > 1:24688725/1‑67 (MQ=255) cATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTACg > 1:27041054/1‑67 (MQ=255) aTAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGc > 1:5012577/1‑68 (MQ=255) gttagcgcttatgGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAg < 1:20805225‑M1/55‑1 (MQ=255) aCGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAgg > 1:34764673/1‑68 (MQ=255) tagcgcttatgGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAgg > 1:1663334‑M1/12‑67 (MQ=255) cGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGt < 1:2433754/68‑1 (MQ=255) ggAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGGTCGCATATTCCGGCAGGt > 1:35395378/1‑67 (MQ=255) aaaGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGc < 1:20457071/67‑1 (MQ=255) tcttatgGGGTAACCCACCTGGCGCGTTCCTTTATCAAGATCACGTTCGAATTTTCCGGCAGGTGcaa < 1:27373070‑M1/61‑2 (MQ=255) gcttatgGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAg > 1:7007384‑M1/8‑68 (MQ=255) aaGGCGTGGGTAAACCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggt > 1:32901085‑M1/1‑18 (MQ=255) aaGGCGTGGGTAAACCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggt < 1:4236491‑M1/68‑51 (MQ=255) aaGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAg < 1:828391/68‑1 (MQ=255) aaGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAg > 1:32740097/1‑68 (MQ=255) ggCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAgtt > 1:3427072/1‑68 (MQ=255) ggCGTGGGTAAACCCCCGGGCGCGGTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAgtt > 1:13590248/1‑68 (MQ=255) cGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAgtt < 1:17434164/66‑1 (MQ=255) gTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGCCGTTCGAATATTCCGGCAGGTGCAgtttgt < 1:36026566/68‑1 (MQ=255) gTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAgtttgt < 1:19506281/68‑1 (MQ=255) gTGGGTAAACCCCCGGGCGCGTTACTTTATCATGATGACGTTCGAATATTCCGGCAGGTGCAgtttgt < 1:24922020/68‑1 (MQ=255) gTAAACCCCCGGGCGCGGTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTAt > 1:6086441/1‑68 (MQ=255) aaCCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTcc < 1:23631371/68‑1 (MQ=255) aaCCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTcc < 1:2770890/68‑1 (MQ=255) cccccGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAg > 1:2208850/1‑68 (MQ=255) ccccGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGa > 1:21602951/1‑68 (MQ=255) ccccGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGa > 1:26036993/1‑68 (MQ=255) cccataagcgctaacttaagggttgcaccatctgaagaatgcgacgcctcggtgccgcgttaagacga > 1:34964044‑M1/1‑3 (MQ=255) cccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:4028296‑M1/1‑3 (MQ=255) cccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:23097290‑M1/1‑3 (MQ=255) cccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:7248905‑M1/1‑3 (MQ=255) cccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:35837735‑M1/1‑3 (MQ=255) cccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:25282149‑M1/1‑3 (MQ=255) cccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:25645312‑M1/1‑3 (MQ=255) cccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:15220274‑M1/1‑3 (MQ=255) cccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:13221872‑M1/1‑3 (MQ=255) cccGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGaa > 1:30395749/1‑68 (MQ=255) | TGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAA > CP009273/1874028‑1874160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |