| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2691481 | 458 (1.030) | 43 (0.110) | 13/100 | NT | 9.2% | coding (429/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound |
| ? | CP009273 | = 2691501 | 437 (1.100) | coding (409/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound | |||||
Only 100 of 707 total aligned reads displayed.
GACCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAG > CP009273/2691415‑2691548 | gACCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTtggctgg < 1:36092285/68‑1 (MQ=255) aCCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTtggctggc > 1:12439482/1‑68 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTtggctggc < 1:26307201/67‑1 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCg < 1:17918121/68‑1 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCg < 1:16304323/68‑1 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCg < 1:25950418/68‑1 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCg < 1:31750622/68‑1 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCg > 1:4397670/1‑68 (MQ=255) tCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAg < 1:24872536/68‑1 (MQ=255) tCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAg < 1:2100222/68‑1 (MQ=255) tCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAg < 1:2903657/68‑1 (MQ=255) tCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAg < 1:9022265/68‑1 (MQ=255) cATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGa > 1:5686076/1‑68 (MQ=255) cATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGa > 1:857171/1‑68 (MQ=255) cATGTCCCAGACAACGCATCGTCAAAACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGa < 1:34651955/68‑1 (MQ=255) tGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGAtt > 1:15599471/1‑68 (MQ=255) cccAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAAc < 1:29564332/68‑1 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGATTTTGGCTGGCGATAAGATTAACCcgcg > 1:2564478/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGgcgcggggtaatcttatc > 1:11446789‑M1/1‑49 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTACCCcgcg > 1:20575221/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:31081428/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:32264717/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:35584373/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:617086/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:23841456/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:21971972/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:8222240/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:10335968/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:11651197/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACAATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:14214456/1‑68 (MQ=255) cAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgc < 1:12069357/66‑1 (MQ=255) aCGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGca > 1:27768302‑M2/1‑66 (MQ=255) aCGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGca > 1:26646091‑M2/1‑66 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:11197195‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:32880773‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:35185819‑M2/1‑65 (MQ=255) tCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAg > 1:10010769/1‑68 (MQ=255) tCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAg < 1:9363788/68‑1 (MQ=255) cGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAgg < 1:3754082/68‑1 (MQ=255) cGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAgg < 1:33379788/68‑1 (MQ=255) cGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAgg < 1:5977866/68‑1 (MQ=255) aTACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTa > 1:17004687/1‑68 (MQ=255) aTACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTa < 1:17669579/68‑1 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:5334098/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:1351556/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:24349119/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:6425803/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:6751860/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:2276888/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:3371772/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:7653792/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:19573514/1‑68 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGccgcgggttaatcttatcgccagccaaattcagcgtg > 1:20754058‑M1/1‑31 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtg > 1:27527263‑M2/1‑51 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGa > 1:30636005/1‑68 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGa > 1:19793920/1‑68 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGa < 1:4041119/68‑1 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGa > 1:22369079/1‑68 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGa < 1:728840/68‑1 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAACATTAACCCGCGGcagccaaattcagcgtg > 1:15984536‑M2/1‑51 (MQ=255) cAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGaa > 1:3685382/1‑68 (MQ=255) cAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGaa < 1:21479757/68‑1 (MQ=255) ccaccaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATa > 1:36566944/1‑68 (MQ=255) ccaccaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATa > 1:20042681/1‑68 (MQ=255) caccaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATaa > 1:15272426/1‑68 (MQ=255) caccaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATaa > 1:32738378/1‑68 (MQ=255) accaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATaa > 1:30193780/1‑67 (MQ=255) accaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATaa > 1:23110120/1‑67 (MQ=255) caTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAAcc > 1:13028935/1‑68 (MQ=255) aTAGCCACGCTGAATTTGGCTGccgcgggttaatcttttcgccagccaaattcaggctggctatggtg > 1:30347026‑M1/1‑22 (MQ=255) tAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGc < 1:9270800/68‑1 (MQ=255) tAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGc < 1:2417480/68‑1 (MQ=255) tAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGc < 1:28179290/68‑1 (MQ=255) aGCCACGCTGAATTTGGCTGccgcgggttaagcttatcgccagccaaattcagcgtggctatggtggt > 1:34292789‑M1/1‑20 (MQ=255) aGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtggctatggtggt > 1:19184313‑M2/1‑40 (MQ=255) aGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:32493313/1‑68 (MQ=255) aGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:24610810/1‑68 (MQ=255) aGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:29365295/1‑68 (MQ=255) aGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:16574754/1‑68 (MQ=255) gCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:3393523/1‑67 (MQ=255) cccGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:23343667/3‑68 (MQ=255) cACGCTGAATTTGGCTGccgcgggttaatcttatcgccagccaaattcaggggggctttggtggttgg > 1:28643442‑M1/1‑17 (MQ=255) cACGCTGAATTTGGCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgg > 1:2177955‑M1/1‑17 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:9592539/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:18795359/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:5135336/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:4731268/1‑68 (MQ=255) aCGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattctgcgtggctatggtggttggg > 1:18178744‑M2/1‑36 (MQ=255) aCGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtggctatggtggttggg > 1:10645255‑M2/1‑36 (MQ=255) aCGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtggctatggtggttggg > 1:2023061‑M2/1‑36 (MQ=255) cGCTGAAATTGGCTGGCGATAACATAAACCCGCGGcagccaaattcagcgtggctatggtggttgggt > 1:2526458‑M2/1‑35 (MQ=255) gCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAAcc > 1:14765961/1‑68 (MQ=255) aTTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCg > 1:14611034/1‑67 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:35047893‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:28442596‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgc < 1:18464549‑M1/67‑65 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgc < 1:27249329‑M1/67‑65 (MQ=255) tGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcgt < 1:16726643‑M1/68‑67 (MQ=255) gccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcgtt < 1:19421188‑M1/68‑68 (MQ=255) gccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcgtt < 1:13872242‑M1/68‑68 (MQ=255) | GACCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAG > CP009273/2691415‑2691548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |