| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2943957 = | NA (NA) | 9 (0.020) | 6/92 | NT | NA | intergenic (+25/+37) | argA/recD | fused acetylglutamate kinase homolog (inactive)/amino acid N‑acetyltransferase/exonuclease V (RecBCD complex), alpha chain |
| ? | CP009273 | 2943974 = | NA (NA) | noncoding (3/14 nt) | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 473 total aligned reads displayed.
CTACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGA > CP009273/2943890‑2944024 | cTACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACa < 1:35713761/68‑1 (MQ=255) tgagcggagcagtggtctggcggcgttgtttagttcacgggaataaacgtaattgccggatgcgacAt > 1:4063090‑M1/67‑68 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:27799648/1‑68 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:18066624/1‑68 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:18247108/1‑68 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt < 1:31360273/68‑1 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:31944698/1‑68 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt < 1:7534683/68‑1 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:23723936/1‑68 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:12069727/1‑68 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:20773168/1‑68 (MQ=255) tACCAGCGTAAAGCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt < 1:11275806/68‑1 (MQ=255) aCCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:7869906/1‑67 (MQ=255) aCCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATg < 1:6582692/68‑1 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc < 1:6787697/68‑1 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc > 1:25826377/1‑68 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc > 1:2473368/1‑68 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc > 1:20384741/1‑68 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc > 1:2145384/1‑68 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc < 1:30835813/68‑1 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc > 1:5621634/1‑68 (MQ=255) gCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTa > 1:24884213/1‑68 (MQ=255) cGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTa > 1:19347997/1‑67 (MQ=255) gTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAac > 1:22806096/1‑68 (MQ=255) aactCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAaca < 1:33721294/64‑1 (MQ=255) aaaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAaca < 1:25050375/67‑1 (MQ=255) aaaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAaca < 1:15835244/67‑1 (MQ=255) aaaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAaca < 1:7139649/67‑1 (MQ=255) aaaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAaca < 1:8186957/67‑1 (MQ=255) aaaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAaca < 1:11474435/67‑1 (MQ=255) aaaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAac > 1:15643744/1‑66 (MQ=255) aaaTCCAAACTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAaca < 1:4485252/67‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:19201085/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:8708129/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:29324910/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:30101852/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:9011623/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:23489432/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:13355186/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:6102540/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:1230209/68‑1 (MQ=255) tCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCg > 1:26956814/1‑68 (MQ=255) tCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCg > 1:10173120/1‑68 (MQ=255) tCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCg > 1:16749459/1‑68 (MQ=255) tCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCg > 1:850199/1‑68 (MQ=255) aaGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACg < 1:33165487/68‑1 (MQ=255) actgtTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATCCGACATGCGTAACACACGTACg > 1:28544430/3‑67 (MQ=255) aGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACg > 1:31112490/1‑67 (MQ=255) tgtTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTc > 1:2883689/1‑67 (MQ=255) gATGGCGGATTTAGGGTAAGCCATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATc < 1:34220057/68‑1 (MQ=255) tagCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg > 1:25989710/3‑68 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACTTGCGTAACACTCGTACGTCGCATCCg > 1:25323289/1‑68 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg < 1:36957003/68‑1 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg < 1:11969141/68‑1 (MQ=255) gCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGc > 1:14809306/1‑68 (MQ=255) cGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGc < 1:5147609/67‑1 (MQ=255) aTTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAAt < 1:33968963/67‑1 (MQ=255) tAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:13727612/68‑1 (MQ=255) tAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:35483648/68‑1 (MQ=255) tAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:5489783/68‑1 (MQ=255) tAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:27280856/68‑1 (MQ=255) tAGGGTAAGCGAAGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:9147454/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:16296636/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:12640615/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:36837601/68‑1 (MQ=255) gggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGtt > 1:13200433/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:15467700/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:17634855/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:29065069/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:28793537/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:21743089/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:12691684/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:24303393/1‑68 (MQ=255) gTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTa > 1:36527107/1‑68 (MQ=255) tAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTAt > 1:23223393/1‑68 (MQ=255) gCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTc > 1:27554854/1‑67 (MQ=255) cGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTTCGTTTTTTccc > 1:22265038/1‑68 (MQ=255) cGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTccc > 1:1458209/1‑68 (MQ=255) gATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTcc < 1:22988870/66‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:32940232/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:19037307/68‑1 (MQ=255) cgtaattgccggatgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGGTTATTCCCGTGa < 1:10759374‑M1/49‑1 (MQ=255) tcgtcgGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTaa < 1:5756620/68‑1 (MQ=255) tcgtcgGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTaa > 1:28402854/1‑68 (MQ=255) tgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgcc > 1:3835305‑M1/7‑68 (MQ=255) tgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgcc > 1:14270370‑M1/7‑68 (MQ=255) tgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgcc > 1:18862681‑M1/7‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:9549544‑M1/6‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:19714399‑M1/6‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:24029069‑M1/6‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:26476912‑M1/6‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:30306231‑M1/6‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:32454763‑M1/6‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgcc < 1:35167437‑M1/62‑1 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTCATCCCCGTGAACTAAACAAcgccg > 1:34316514‑M1/6‑68 (MQ=255) gacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACgccgcc > 1:22076982‑M1/4‑68 (MQ=255) gacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACgccgcc > 1:4907605‑M1/4‑68 (MQ=255) cATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAg > 1:7756333‑M1/2‑68 (MQ=255) aTGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGa < 1:34712460/68‑1 (MQ=255) aTGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGa < 1:16039462/68‑1 (MQ=255) | CTACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGA > CP009273/2943890‑2944024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |