| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3063441 | NA (NA) | 5 (0.010) | 3/98 | NT | NA | noncoding (80/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3063452 | NA (NA) | noncoding (91/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 784 total aligned reads displayed.
GAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAA > CP009273/3063376‑3063508 | aCGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAg < 1:11834770/67‑1 (MQ=255) aCGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGc < 1:2177835/68‑1 (MQ=255) cGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCg > 1:20763487/1‑68 (MQ=255) ccTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTa > 1:18472769/1‑68 (MQ=255) cTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTa < 1:26510785/67‑1 (MQ=255) tcaggCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCa > 1:10024596/4‑68 (MQ=255) tCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCa < 1:24229750‑M2/68‑2 (MQ=255) tCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCa > 1:7331234‑M2/1‑67 (MQ=255) ccGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCa < 1:19878457‑M2/67‑2 (MQ=255) cGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCatc < 1:1422899‑M2/68‑4 (MQ=255) gCCTACAAAACCCTGCAAATTCAAGATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCatcag < 1:28922553‑M2/68‑6 (MQ=255) ccTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCatcag > 1:5494912‑M2/1‑62 (MQ=255) cAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt < 1:2482548/68‑1 (MQ=255) aaaaaCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtt > 1:25204886/1‑68 (MQ=255) aaaaCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:16303143/1‑68 (MQ=255) ccTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGCCAATTTTGCt > 1:10575203/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:33404279/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:20881201/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:8295270/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:24990159/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:19138686/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:12497010/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:12771178/1‑68 (MQ=255) atatTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaaaaa > 1:17828822/1‑68 (MQ=255) tGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAcc < 1:25563812/68‑1 (MQ=255) gCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAccc < 1:22613323/68‑1 (MQ=255) gCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAccc > 1:20107681/1‑68 (MQ=255) gCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAccc > 1:5852217/1‑68 (MQ=255) gCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAccc > 1:28058120/1‑68 (MQ=255) gCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAccc > 1:16775619/1‑68 (MQ=255) aGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGc > 1:28764773/1‑68 (MQ=255) aGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGc > 1:7685333/1‑68 (MQ=255) aGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGc > 1:15347725/1‑68 (MQ=255) aGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGc > 1:2453570/1‑68 (MQ=255) aGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGc > 1:10812593/1‑68 (MQ=255) aGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGc > 1:30856153/1‑68 (MQ=255) gATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCag > 1:15666/1‑68 (MQ=255) gATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCag > 1:11575384/1‑68 (MQ=255) tACGTGTAGGCCTGATAAGCGTAGCGCatcaggcctacacgtatcctgcaatatattgaatttgcagg > 1:25775413‑M2/1‑27 (MQ=255) tACGTGTAGGCCTGATAAGCGTAGCGCatcaggcctacacgtatcctgcaatatattgaatttgcagg > 1:29291637‑M2/1‑27 (MQ=255) tACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCaga < 1:1369384/67‑1 (MQ=255) aCGTGTAGGCCTGATAAGCGTAGCGCatcaggcctacacgtatcctgcaatatattgaatttgcaggt > 1:32789783‑M2/1‑26 (MQ=255) cGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCg > 1:9583813/1‑68 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:8812835/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:23952212/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:17186229/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:31342899/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:34017744/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCgg > 1:36680263/1‑67 (MQ=255) tgtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCAGCAGAGCgg > 1:36326225/1‑67 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCggg < 1:16538866/67‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCggg < 1:28571754/67‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCggg < 1:17389404/67‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCggg < 1:5229153/67‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCggg < 1:13851947/67‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGc < 1:6502612/68‑1 (MQ=255) gtAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGc < 1:22931749/68‑1 (MQ=255) gtACGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGc < 1:4286175/68‑1 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCt < 1:4747059/68‑1 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCt > 1:14855186/1‑68 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCt > 1:15109743/1‑68 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCt > 1:30377508/1‑68 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCt < 1:31719763/68‑1 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCt > 1:26772108/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTg > 1:3000344/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTg > 1:9416962/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTg > 1:19476111/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTg > 1:18031458/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCG‑AAAAAAGACCCGCAGAGCGGGCCTTga > 1:21263710/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAACGACCCGCAGCGCGGGCCTTga > 1:28319017/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:7007980/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:18981504/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:4110117/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:17660437/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:35320241/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:34907987/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:3449185/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:22022872/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:33768433/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:12305545/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:32054822/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:22413927/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:26970985/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:27467894/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:16619246/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga > 1:16007849/1‑68 (MQ=255) cTGATgcgctacgcttatcaggcctacacgtatcctgcaatatattgaatttgcaggtttttgtagg > 1:10181611‑M1/1‑5 (MQ=255) cTGATgcgctacgcttatcaggcctacacgtatcctgcaatatattgaatttgcaggtttttgtagg > 1:35737455‑M1/1‑5 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTgag > 1:30241939/1‑68 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga < 1:32365886/67‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga < 1:23586616/67‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTga < 1:29864406/67‑1 (MQ=255) tGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTgaga < 1:37027498/68‑1 (MQ=255) tgcgctacgcttatcaggcctacacgtatcctgcaatatattgaatttgcaggtttttgtaggccgga > 1:12094336‑M1/1‑1 (MQ=255) tgcgctacgcttatcaggcctacacgtatcctgcaatatattgaatttgcaggtttttgtaggccgg < 1:13171169‑M1/67‑67 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATaa > 1:5027681/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATaa > 1:20487871/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATaa > 1:13363105/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATaa > 1:26051839/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATaa > 1:14473326/1‑68 (MQ=255) | GAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAA > CP009273/3063376‑3063508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |